View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8315_low_3 (Length: 447)

Name: NF8315_low_3
Description: NF8315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8315_low_3
NF8315_low_3
[»] chr2 (9 HSPs)
chr2 (85-230)||(12794375-12794513)
chr2 (357-433)||(12794594-12794669)
chr2 (280-330)||(8192480-8192530)
chr2 (280-330)||(19525525-19525575)
chr2 (280-330)||(6099519-6099569)
chr2 (280-330)||(19605974-19606024)
chr2 (280-334)||(26482114-26482168)
chr2 (281-330)||(4618815-4618864)
chr2 (385-433)||(503623-503671)
[»] chr1 (12 HSPs)
chr1 (280-347)||(37046993-37047060)
chr1 (280-347)||(15581142-15581209)
chr1 (280-347)||(24857831-24857898)
chr1 (280-350)||(6127987-6128057)
chr1 (280-346)||(41470611-41470677)
chr1 (281-330)||(24216996-24217045)
chr1 (280-333)||(39964527-39964580)
chr1 (280-347)||(4824979-4825047)
chr1 (280-335)||(8177182-8177238)
chr1 (288-336)||(20999300-20999347)
chr1 (280-320)||(25237118-25237158)
chr1 (280-344)||(34228885-34228949)
[»] chr8 (5 HSPs)
chr8 (280-330)||(11714948-11714998)
chr8 (292-330)||(19158905-19158943)
chr8 (280-347)||(6530815-6530882)
chr8 (282-330)||(34639337-34639385)
chr8 (280-332)||(40136963-40137015)
[»] chr5 (7 HSPs)
chr5 (280-336)||(19373258-19373314)
chr5 (280-347)||(16172984-16173051)
chr5 (280-347)||(31669025-31669092)
chr5 (280-330)||(15485420-15485470)
chr5 (280-326)||(36895447-36895493)
chr5 (278-335)||(12052847-12052904)
chr5 (294-330)||(33025498-33025534)
[»] chr3 (11 HSPs)
chr3 (283-347)||(42799751-42799815)
chr3 (280-347)||(18316499-18316566)
chr3 (278-335)||(35623265-35623322)
chr3 (280-336)||(34844390-34844446)
chr3 (285-347)||(3055002-3055065)
chr3 (286-332)||(26158834-26158880)
chr3 (280-336)||(44069777-44069834)
chr3 (280-336)||(40268508-40268564)
chr3 (307-347)||(40286885-40286925)
chr3 (307-347)||(47079709-47079749)
chr3 (282-330)||(50195410-50195458)
[»] chr4 (12 HSPs)
chr4 (280-347)||(37980148-37980215)
chr4 (281-334)||(47183343-47183396)
chr4 (280-336)||(56409970-56410026)
chr4 (281-320)||(19220561-19220600)
chr4 (280-347)||(25434659-25434725)
chr4 (296-347)||(29195103-29195154)
chr4 (281-347)||(6606066-6606132)
chr4 (280-330)||(7093394-7093444)
chr4 (280-330)||(45302857-45302907)
chr4 (286-347)||(42281240-42281301)
chr4 (280-347)||(37455577-37455645)
chr4 (280-336)||(55256199-55256255)
[»] chr7 (6 HSPs)
chr7 (284-345)||(18847427-18847488)
chr7 (280-325)||(28646996-28647041)
chr7 (280-347)||(35328875-35328942)
chr7 (305-347)||(48125200-48125242)
chr7 (281-330)||(12211665-12211714)
chr7 (281-330)||(37056236-37056285)
[»] chr6 (7 HSPs)
chr6 (281-330)||(8479330-8479379)
chr6 (280-347)||(3869704-3869771)
chr6 (280-347)||(6691551-6691618)
chr6 (280-330)||(3907559-3907609)
chr6 (280-330)||(17149585-17149635)
chr6 (285-333)||(6384008-6384056)
chr6 (280-320)||(28741970-28742010)
[»] scaffold0007 (1 HSPs)
scaffold0007 (280-347)||(222333-222400)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 85 - 230
Target Start/End: Original strand, 12794375 - 12794513
Alignment:
Q  85 tgcaacaagcataatattgtagaactcttggtcatatatgctctgaattctgatgctattggatagaaaatagaacttataagatattaactctagtatt 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||| |||||||    
T  12794375 tgcaacaagcataatattgtagaactcttggtcatatatgctctg-------atgctattggatagaaaatagaagttataagatattaactttagtatt 12794467  T
Q  185 attgctattgcactgtctcatgaaccaattgtctcaaaagcattag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12794468 attgctattgcactgtctcatgaaccaattgtctcaaaagcattag 12794513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 12794594 - 12794669
Alignment:
Q  357 ttttagttgctagtcgaaactttcaccatgaaagacatgaatggtttaatatctaacacgctacttcatgtttgaat 433  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||||||||||| ||||| || |||||| |||||||    
T  12794594 ttttagttgttagttgaaactttcaccgtgaaagacatgaatggtttaatatc-aacacactgcttcatttttgaat 12794669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 8192480 - 8192530
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    ||||||||||||| | |||||||| |||||||||||||||| |||||||||    
T  8192480 gaatcgaacctgagaccttgagaggagcacactccaagatcccaagccaac 8192530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 19525525 - 19525575
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    ||||||||||||| |||||||||||| |||||| ||||||| |||||||||    
T  19525525 gaatcgaacctgagatcttgagagaaacacacttcaagatcccaagccaac 19525575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 6099519 - 6099569
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    ||||||||||||| | |||||||| ||||||||||||| || |||||||||    
T  6099519 gaatcgaacctgagaccttgagaggagcacactccaaggtcccaagccaac 6099569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 19605974 - 19606024
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    ||||||||||||| | |||||||| ||| |||||||||||| |||||||||    
T  19605974 gaatcgaacctgagaccttgagaggagcgcactccaagatcccaagccaac 19606024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 26482168 - 26482114
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacacca 334  Q
    ||||||||||||| | |||||||| |||||||||| || || |||||||||||||    
T  26482168 gaatcgaacctgagaccttgagaggagcacactcctaggtcccaagccaacacca 26482114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 4618815 - 4618864
Alignment:
Q  281 aatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    |||||||||||||| |||||||| |||| ||||||||||  |||||||||    
T  4618815 aatcgaacctgaaaccttgagaggagcatactccaagattccaagccaac 4618864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 433
Target Start/End: Complemental strand, 503671 - 503623
Alignment:
Q  385 tgaaagacatgaatggtttaatatctaacacgctacttcatgtttgaat 433  Q
    |||||||||||| |||||| |||||||||||  | ||||||||||||||    
T  503671 tgaaagacatgattggttttatatctaacacattgcttcatgtttgaat 503623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 37047060 - 37046993
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||| ||||||| | |||||||| ||||||||||||| || ||||||||||||||| ||||||||||    
T  37047060 gaatcaaacctgagaccttgagaggagcacactccaaggtcccaagccaacaccaccagaccaaccca 37046993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 15581142 - 15581209
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    |||| |||||||| | ||| |||| ||||||||||||| || ||||||||||||||| | ||||||||    
T  15581142 gaattgaacctgagacctttagaggagcacactccaaggtcccaagccaacaccaccaggccaaccca 15581209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 24857831 - 24857898
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||| ||||||| | |||||||||||| ||||||||| || | ||||||||||||| | ||||||||    
T  24857831 gaatcaaacctgagagcttgagagaagcccactccaaggtccctagccaacaccaccaggccaaccca 24857898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 6127987 - 6128057
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaacccattt 350  Q
    ||||||||| ||| | |||||||| ||||| ||||||| || ||| ||||||||||| ||||||| |||||    
T  6127987 gaatcgaacttgagaccttgagaggagcacgctccaaggtcccaaaccaacaccaccagaccaacacattt 6128057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 41470611 - 41470677
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccc 346  Q
    ||||||||| ||| | |||||||| |||| |||||||| || ||||||||||||||| | |||||||    
T  41470611 gaatcgaacttgagaccttgagaggagcatactccaaggtctcaagccaacaccaccgggccaaccc 41470677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 24217045 - 24216996
Alignment:
Q  281 aatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    |||||||||||| | |||||||| |||||||||||||||| |||| ||||    
T  24217045 aatcgaacctgagaccttgagaggagcacactccaagatcccaagtcaac 24216996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 39964580 - 39964527
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacacc 333  Q
    ||||| ||||||| | |||||||| ||||||||||||| || ||||||||||||    
T  39964580 gaatcaaacctgagaccttgagaggagcacactccaaggtcgcaagccaacacc 39964527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 4825047 - 4824979
Alignment:
Q  280 gaatcgaacctgaaatcttga-gagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||| ||||||| | ||||| ||| ||||||||||||| || ||||||||||||| | ||||||||||    
T  4825047 gaatcaaacctgagaccttgaagaggagcacactccaaggtcccaagccaacaccatcagaccaaccca 4824979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 8177182 - 8177238
Alignment:
Q  280 gaatcgaacctgaaatcttga-gagaagcacactccaagatcacaagccaacaccac 335  Q
    ||||||||||||||| ||||| ||| |||||||||| ||||| |||||||| |||||    
T  8177182 gaatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaataccac 8177238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 20999300 - 20999347
Alignment:
Q  288 cctgaaatcttgagagaagcacactccaagatcacaagccaacaccacc 336  Q
    ||||| ||||||||| ||||||||||||||||| |||||| ||||||||    
T  20999300 cctgagatcttgagaaaagcacactccaagatc-caagcctacaccacc 20999347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 25237118 - 25237158
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatc 320  Q
    ||||||||||||| | ||||||||||||| |||||||||||    
T  25237118 gaatcgaacctgagaccttgagagaagcaaactccaagatc 25237158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 34228949 - 34228885
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaac 344  Q
    ||||| ||||||| | |||||||| | |||||||| || || ||||||||||||||| |||||||    
T  34228949 gaatccaacctgagaccttgagaggaacacactccgaggtcccaagccaacaccaccagaccaac 34228885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 11714948 - 11714998
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  11714948 gaatcgaacctgaaatcttgagagaagcaaactccaagatctcaaaccaac 11714998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 19158905 - 19158943
Alignment:
Q  292 aaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  19158905 aaatcttgagagaaacacactccaagatcacaagccaac 19158943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 6530882 - 6530815
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||||||||||| |  ||||||| |||||||||| || || ||||||||||||||| | ||||||||    
T  6530882 gaatcgaacctgagacattgagaggagcacactcctaggtcccaagccaacaccaccaggccaaccca 6530815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 34639337 - 34639385
Alignment:
Q  282 atcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    ||||| ||||| | |||||||| |||||||||||||||| |||||||||    
T  34639337 atcgagcctgagaccttgagaggagcacactccaagatcccaagccaac 34639385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 40136963 - 40137015
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacac 332  Q
    ||||| ||||||| | |||||||| ||||||||||||| || |||||||||||    
T  40136963 gaatcaaacctgagaccttgagaggagcacactccaaggtcccaagccaacac 40137015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 19373314 - 19373258
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacc 336  Q
    ||||||||||| ||| |||||||| ||||||||||||| || |||||||||||||||    
T  19373314 gaatcgaacctaaaaccttgagagtagcacactccaaggtctcaagccaacaccacc 19373258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 16172984 - 16173051
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||||||||||| | |||||||| ||||||||||||| || ||||||||||| ||| | ||||||||    
T  16172984 gaatcgaacctgagaccttgagaggagcacactccaaggtctcaagccaacactaccaggccaaccca 16173051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 31669025 - 31669092
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||||||||| | | |||||||| |||| |||||||| || ||||||||||||| | ||||||||||    
T  31669025 gaatcgaacctaagaccttgagaggagcagactccaaggtcccaagccaacaccatcagaccaaccca 31669092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 15485420 - 15485470
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    ||||||||||||| | |||||||| ||||||||||||| || |||||||||    
T  15485420 gaatcgaacctgagaccttgagaggagcacactccaaggtcccaagccaac 15485470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 36895493 - 36895447
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagc 326  Q
    ||||||||| ||||| |||||||| |||||||||||||||| |||||    
T  36895493 gaatcgaacatgaaaccttgagaggagcacactccaagatcccaagc 36895447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 12052847 - 12052904
Alignment:
Q  278 gtgaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccac 335  Q
    ||||||||||||||  ||||| ||| |||||  |||||||||| ||||||||||||||    
T  12052847 gtgaatcgaacctgggatctttagataagcatcctccaagatctcaagccaacaccac 12052904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 33025534 - 33025498
Alignment:
Q  294 atcttgagagaagcacactccaagatcacaagccaac 330  Q
    |||||||||| |||||||||||||||| |||||||||    
T  33025534 atcttgagaggagcacactccaagatcccaagccaac 33025498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 42799751 - 42799815
Alignment:
Q  283 tcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    |||||||||| | |||||||| ||||||||||||| || ||||||||||||||| | ||||||||    
T  42799751 tcgaacctgagaccttgagaggagcacactccaaggtcccaagccaacaccaccaggccaaccca 42799815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 18316499 - 18316566
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||||||||| | | |||||||| ||||||||||||| || ||||||| ||||||| ||||||||||    
T  18316499 gaatcgaacctaagaccttgagaggagcacactccaaggtcccaagccagcaccaccagaccaaccca 18316566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 35623265 - 35623322
Alignment:
Q  278 gtgaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccac 335  Q
    ||||||||||| ||| | |||||||| ||||||||||||| || ||||||||||||||    
T  35623265 gtgaatcgaacatgagaccttgagaggagcacactccaaggtcccaagccaacaccac 35623322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 34844446 - 34844390
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacc 336  Q
    ||||||||||||| | |||||||| ||||||||||||| || |||||||||| ||||    
T  34844446 gaatcgaacctgagaccttgagaggagcacactccaaggtctcaagccaacaacacc 34844390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 3055065 - 3055002
Alignment:
Q  285 gaacctgaaatcttgag-agaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    |||||||| |||||||| |||||||| ||||||| || ||||||||||||||| | ||||||||    
T  3055065 gaacctgagatcttgaggagaagcacgctccaaggtcccaagccaacaccaccaggccaaccca 3055002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 26158880 - 26158834
Alignment:
Q  286 aacctgaaatcttgagagaagcacactccaagatcacaagccaacac 332  Q
    ||||||| | |||||||| |||||||||||||||| |||||||||||    
T  26158880 aacctgagaccttgagaggagcacactccaagatctcaagccaacac 26158834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 44069834 - 44069777
Alignment:
Q  280 gaatcgaacctgaaatcttgag-agaagcacactccaagatcacaagccaacaccacc 336  Q
    ||||| ||||||| | |||||| || |||||||||||||||| |||||||||||||||    
T  44069834 gaatcaaacctgagaccttgaggaggagcacactccaagatctcaagccaacaccacc 44069777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 40268564 - 40268508
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacc 336  Q
    ||||||||||||| | ||| |||| ||| ||||||||| || |||||||||||||||    
T  40268564 gaatcgaacctgagaccttaagaggagcccactccaaggtcccaagccaacaccacc 40268508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 40286885 - 40286925
Alignment:
Q  307 cacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    |||||||||||||| ||||| ||||||||| ||||||||||    
T  40286885 cacactccaagatctcaagcgaacaccaccagaccaaccca 40286925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 47079749 - 47079709
Alignment:
Q  307 cacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    |||| ||||||||| ||||||||||||||| ||||||||||    
T  47079749 cacattccaagatcccaagccaacaccaccagaccaaccca 47079709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 50195410 - 50195458
Alignment:
Q  282 atcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    ||||||| ||| ||||||||||||||| ||||||||||| |||| ||||    
T  50195410 atcgaacttgagatcttgagagaagcaaactccaagatcccaagacaac 50195458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 37980148 - 37980215
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||||||||||| | |||||||| ||||||||||||| || |||||||||| |||| | ||||||||    
T  37980148 gaatcgaacctgagaccttgagaggagcacactccaaggtcccaagccaacatcaccaggccaaccca 37980215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 47183396 - 47183343
Alignment:
Q  281 aatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacacca 334  Q
    |||||||||||| |||||||||| | ||||||||||| || |||||||||||||    
T  47183396 aatcgaacctgagatcttgagaggatcacactccaaggtctcaagccaacacca 47183343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 56410026 - 56409970
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacc 336  Q
    ||||||||||||| | |||||||| ||||||||||||| || |||||||||| ||||    
T  56410026 gaatcgaacctgagaccttgagaggagcacactccaaggtcccaagccaacagcacc 56409970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 320
Target Start/End: Complemental strand, 19220600 - 19220561
Alignment:
Q  281 aatcgaacctgaaatcttgagagaagcacactccaagatc 320  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  19220600 aatcgaacctgaaaccttgagaggagcacactccaagatc 19220561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 25434659 - 25434725
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||| ||||||| | |||||||||||||||||||||| || |||||| |||||||| | ||||||||    
T  25434659 gaatcaaacctgagaccttgagagaagcacactccaaggtcccaagcc-acaccaccaggccaaccca 25434725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 29195154 - 29195103
Alignment:
Q  296 cttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    |||||||| ||||||||||||| || ||||||||||||||| | ||||||||    
T  29195154 cttgagaggagcacactccaaggtcccaagccaacaccaccaggccaaccca 29195103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 6606132 - 6606066
Alignment:
Q  281 aatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    |||||||||||| ||||||| || | ||| ||||||| || ||||||||||||| | ||||||||||    
T  6606132 aatcgaacctgagatcttgaaaggatcactctccaaggtcccaagccaacaccatcagaccaaccca 6606066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 7093444 - 7093394
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    ||||||||||| ||| ||||| || |||||||||||||||| |||||||||    
T  7093444 gaatcgaacctaaaaccttgaaaggagcacactccaagatcccaagccaac 7093394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 45302907 - 45302857
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    ||||| ||||||||| ||||||||||||| ||||||||||| ||| |||||    
T  45302907 gaatcaaacctgaaaacttgagagaagcaaactccaagatctcaaaccaac 45302857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 42281240 - 42281301
Alignment:
Q  286 aacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||||| | |||||||| |||||||| |||| || ||||||||||||||| | ||||||||    
T  42281240 aacctgagaccttgagaggagcacactacaaggtcccaagccaacaccacctggccaaccca 42281301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 37455645 - 37455577
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactcc-aagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||||||||||| | |||||||| |||| ||||| ||| || ||||||||||||||| | ||||||||    
T  37455645 gaatcgaacctgagaccttgagaggagcatactccaaaggtcccaagccaacaccaccaggccaaccca 37455577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 55256199 - 55256255
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacc 336  Q
    |||||||||||||   |||||| ||||||||||||||  ||||||||||| ||||||    
T  55256199 gaatcgaacctgaggccttgagggaagcacactccaatgtcacaagccaataccacc 55256255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 18847427 - 18847488
Alignment:
Q  284 cgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaacc 345  Q
    ||||| ||| |||||||||| ||||||||| |||||| ||||||||||||||| | ||||||    
T  18847427 cgaacttgagatcttgagaggagcacactcgaagatctcaagccaacaccaccaggccaacc 18847488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 28647041 - 28646996
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaag 325  Q
    ||||||||||||| | ||||||||||||||||||||||||| ||||    
T  28647041 gaatcgaacctgagaccttgagagaagcacactccaagatcccaag 28646996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 35328875 - 35328942
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||| ||||| ||| |||||||||||||||||| ||| |  ||||||||||||||| | ||||||||    
T  35328875 gaatcaaacctaaaaccttgagagaagcacactcgaaggttccaagccaacaccaccaggccaaccca 35328942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 48125200 - 48125242
Alignment:
Q  305 agcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||||||||||| || ||||||||||||||| ||||||||||    
T  48125200 agcacactccaaggtcccaagccaacaccaccagaccaaccca 48125242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 12211665 - 12211714
Alignment:
Q  281 aatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    |||| ||||||| |||||||||| ||||||||||||||||  ||||||||    
T  12211665 aatcaaacctgagatcttgagaggagcacactccaagatcctaagccaac 12211714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 37056285 - 37056236
Alignment:
Q  281 aatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    ||||||| || ||| |||||||| |||||||||||||||||||| |||||    
T  37056285 aatcgaatctcaaaccttgagaggagcacactccaagatcacaaaccaac 37056236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 8479379 - 8479330
Alignment:
Q  281 aatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    |||||||||||||||||| |||| |||||||||||||||| |||| ||||    
T  8479379 aatcgaacctgaaatcttaagaggagcacactccaagatcccaagtcaac 8479330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 3869771 - 3869704
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||||||| ||| | ||||| |||||||||||| |||||| ||||||||||||| | | ||||||||    
T  3869771 gaatcgaacatgagaccttgatagaagcacactcgaagatctcaagccaacaccatcaggccaaccca 3869704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 6691551 - 6691618
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||||||||||| | |||||||| ||||||||||||| ||  ||| |||||||||| | ||||||||    
T  6691551 gaatcgaacctgagaccttgagaggagcacactccaaggtctaaagtcaacaccaccaggccaaccca 6691618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 3907609 - 3907559
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    ||||||||| |||||||||||||| ||||||| |||||||| ||| |||||    
T  3907609 gaatcgaacttgaaatcttgagaggagcacaccccaagatcccaaaccaac 3907559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 17149585 - 17149635
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatcacaagccaac 330  Q
    ||||||||||||| | |||||||| |||||||||||||||| ||| |||||    
T  17149585 gaatcgaacctgagaccttgagaggagcacactccaagatcccaaaccaac 17149635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 6384008 - 6384056
Alignment:
Q  285 gaacctgaaatcttgagagaagcacactccaagatcacaagccaacacc 333  Q
    |||||||| | |||||||| ||||||||||||| || ||||||||||||    
T  6384008 gaacctgagaccttgagaggagcacactccaaggtcccaagccaacacc 6384056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 28741970 - 28742010
Alignment:
Q  280 gaatcgaacctgaaatcttgagagaagcacactccaagatc 320  Q
    ||||||||||||| | |||||||| ||||||||||||||||    
T  28741970 gaatcgaacctgagaccttgagaggagcacactccaagatc 28742010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 222400 - 222333
Alignment:
Q  280 gaatcgaacctgaaatcttga-gagaagcacactccaagatcacaagccaacaccacccgaccaaccca 347  Q
    ||||||||| ||||||||||| ||| | |||||||||||||| |||||||||| |||| || |||||||    
T  222400 gaatcgaac-tgaaatcttgaagaggaacacactccaagatcccaagccaacatcaccggaacaaccca 222333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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