View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8315_low_5 (Length: 374)
Name: NF8315_low_5
Description: NF8315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8315_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 2475152 - 2475510
Alignment:
| Q |
1 |
tatgcaccaatggctaaaagagaaattgtttgggaaagttttgcatgatcgaaatgaatcggcttcctgagaagcatacataaaacattcattcaagaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2475152 |
tatgcaccaatggctaaaagagaaattgtttgggaaagttttgcatgatcgaaatgaattggcttcctgagaagcatacataaaacattcattcaagaaa |
2475251 |
T |
|
| Q |
101 |
gagagaagacgtgtgctagctaagagagaggaaaaaacctagtctccatcataactatgcagaatcct-ataatgatatgttagatgatccaacgacaaa |
199 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |
|
|
| T |
2475252 |
tagaaaagacatgtgctagctaagagagaggaaaaaacctattctccatcataactatgcagaatcctgataatgatatgttagatgatccaactacaga |
2475351 |
T |
|
| Q |
200 |
cgttacgttctaacgattgagatcctaaaaaggaaaagttatttgtgtcatgccttgaggttaaccaaagggaaggacacaagttcattagaagataaag |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2475352 |
cgttacgttctaacgattgagatcctaaaaaggaaaagttattggtgtcatgccttgaggttagccaaaggggaggacacaagttcattagaagataaag |
2475451 |
T |
|
| Q |
300 |
cagattacgcttttgatattacaagagttggctatatatttcattatctgcttaaagat |
358 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2475452 |
cagaatacgcttttgatattacaagagttggccatatatttcattatctgcttaaagat |
2475510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 117051 - 116963
Alignment:
| Q |
207 |
ttctaacgattgagatcctaaaaaggaaaagttatttgtgtcatgccttgaggttaaccaaagggaaggacacaagttcattagaagat |
295 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || | |||||| |||| || ||||||| |||| |||||||| ||||||| |
|
|
| T |
117051 |
ttctaacgattgagatcctaaaagagaaaagttatacatggcctgccttaaggtcctcctaagggaatgacataagttcatcagaagat |
116963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University