View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8315_low_7 (Length: 319)
Name: NF8315_low_7
Description: NF8315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8315_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 8064503 - 8064316
Alignment:
| Q |
1 |
cttcccattatgcgcaattgcttccaaaccaaaatcgagttctcacataacttagaatctccaacattactacaaaaagattacaccatttcccaaaaat |
100 |
Q |
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| T |
8064503 |
cttcccattatgcgcaattgcttccaaaccaaaatcgagttctcacataacttagaatctccaacattactacaaaaagattacaccatttcccaaaaat |
8064404 |
T |
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| Q |
101 |
attttgttgaccaagattcaccaattttacactacaatccaacctcacaaaatttgtttgtcaacaagtaatactcgtactcataatg |
188 |
Q |
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| T |
8064403 |
attttgttgaccaagattcaccaattttacactacaatccaacctcacaaaatttgtttgtcaacaagtaatactcgtactcataatg |
8064316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 8064231 - 8064193
Alignment:
| Q |
273 |
ctatctataagaaggttggcgttgtttggtagtattatt |
311 |
Q |
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| T |
8064231 |
ctatctataagaaggttggcgttgtttggtattattatt |
8064193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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