View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8315_low_9 (Length: 306)
Name: NF8315_low_9
Description: NF8315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8315_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 33340433 - 33340728
Alignment:
| Q |
1 |
atcaacggtgtcggcgtgtctgtgtttgtgttgtgtccg-------tatccgtacttcataggtagctgtaaatatcatagtcaactgattttaactcaa |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33340433 |
atcaacggtgtcggcgtgtctgtgtttgtgttgtgtccggtgtctgtatccgtacttcataggtagctgtaaatatcatagtcaactgattttaactcaa |
33340532 |
T |
|
| Q |
94 |
taagacaacatgtgatgataaattagatgaaaaatgactctaaaacaggtactaaacatggtttgttgttggttggagaacccaaattctgaggcattta |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33340533 |
taagacaacatgtgatgataaattagatgaaaaatgactctaaaacaggtactaaacatggtttgttgttggttggagaacccaaattctgaggcattta |
33340632 |
T |
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| Q |
194 |
agtgtcacattttaagaatcaaagactatctatggttggctgaggatggaatgaaaatgcaaggatacaatggttctcaatgttgggatgttgctt |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33340633 |
agtgtcacattttaagaatcaaagactatctatggttggctgaggatggaatgaaaatgcaaggatacaatggttctcaatgttgggatgttgctt |
33340728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 35125665 - 35125370
Alignment:
| Q |
1 |
atcaacggtgtcggcgtgtctgtgtttgtgttgtgtccg-------tatccgtacttcataggtagctgtaaatatcatagtcaactgattttaactcaa |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35125665 |
atcaacggtgtcggcgtgtctgtgtttgtgttgtgtccggtgtcagtatccgtacttcataggtagctgtaaatatcatagtcaactgattttaactcaa |
35125566 |
T |
|
| Q |
94 |
taagacaacatgtgatgataaattagatgaaaaatgactctaaaacaggtactaaacatggtttgttgttggttggagaacccaaattctgaggcattta |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35125565 |
taagacaacatgtgatgataaattagatgaaaaatgactctaaaacaggtactaaacatggtttgttgttggttggagaacccaaattctgaggcattta |
35125466 |
T |
|
| Q |
194 |
agtgtcacattttaagaatcaaagactatctatggttggctgaggatggaatgaaaatgcaaggatacaatggttctcaatgttgggatgttgctt |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35125465 |
agtgtcacattttaagaatcaaagactatctatggttggctgaggatggaatgaaaatgcaaggatacaatggttctcaatgttgggatgttgctt |
35125370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 22506218 - 22506333
Alignment:
| Q |
139 |
caggtactaaacatggtttgttgttggttggagaacccaaattctgaggcatttaagtgtcacattttaagaatcaaagactatctatggttggctgagg |
238 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | |||| ||| |||||||||||||||||| ||||||||||||| |
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| T |
22506218 |
caggtactaaacatggtttgttgttgggtggagaaccctgattctgaggcatttaaatatcacctttcaagaatcaaagactatctctggttggctgagg |
22506317 |
T |
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| Q |
239 |
atggaatgaaaatgca |
254 |
Q |
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|||||||||||||||| |
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| T |
22506318 |
atggaatgaaaatgca |
22506333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 14359576 - 14359625
Alignment:
| Q |
8 |
gtgtcggcgtgtctgtgtttgtgttgtgtccgtatccgtacttcataggt |
57 |
Q |
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||||||||||||| |||| ||||| |||||||||||||| |||||||||| |
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| T |
14359576 |
gtgtcggcgtgtccgtgtctgtgtcgtgtccgtatccgtgcttcataggt |
14359625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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