View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_high_15 (Length: 307)
Name: NF8316_high_15
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 289
Target Start/End: Original strand, 7451236 - 7451510
Alignment:
| Q |
15 |
gatgaacaaattaagctaatgcccgaattgtggcgcaatttaggggttgttgaaaactagagctataggtgaagcataaagaaggaaaggaacagtggag |
114 |
Q |
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| T |
7451236 |
gatgaacaaattaagctaatgccccaattgtggcgcaatttaggggttgttgaaaactagagctataggtgaagcataaagaaggaaaggaacagtggag |
7451335 |
T |
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| Q |
115 |
gcttacccgttcagttcacagccatgcatatacacttacttaaaaaattgatatagccactgatattaaactaagcacgtagtaatgggagtaatatttt |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
7451336 |
gcttacccgttcagttcacaaccatgcatatacacttacttaaaaaattgatatagccactgatattaaattaagcacgtggtaatgggagtaatatttt |
7451435 |
T |
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| Q |
215 |
attcaatggctagcgtgaaaggtattagtatggaaggagggaaacatggaagtgtattgtttgtgtgtgacatat |
289 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7451436 |
attcaatggctagcgtgaaagggattagtatggaaggagggaaacatggaagtgtattgtttgtgtgtgacatat |
7451510 |
T |
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