View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_high_17 (Length: 296)
Name: NF8316_high_17
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_high_17 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 34 - 264
Target Start/End: Complemental strand, 2765048 - 2764816
Alignment:
| Q |
34 |
tgtgtgtttgggcttttaagccacgtgagtttttgtaatgggtttaacccatgtgtgtgtggttataaaagggaattaatatccttagtttcaggagaac |
133 |
Q |
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| T |
2765048 |
tgtgtgtttgggcttttaagccacgtgagtttttgtaatgggtttaacccatgtgtgtgtggttataaaagggaattaatatccttagtttcaggagaac |
2764949 |
T |
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| Q |
134 |
agtgagtgcgtgaaataaaagtggccgcagcactgtgaaaataact--gagagagcagtacgacaggagaggaagaaatttggtttccggtgataaaagt |
231 |
Q |
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| T |
2764948 |
agtgagtgcgtgaaataaaagtggccgcagcactgtgaaaataattgagagagagcagtacgacaggagaggaagaaatttggtttccggcgataaaagt |
2764849 |
T |
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| Q |
232 |
gtgttcggcaaacgatctccgttttggctgaaa |
264 |
Q |
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| T |
2764848 |
gtgttcggcaaacgatctccgttttggctgaaa |
2764816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 36967033 - 36966959
Alignment:
| Q |
209 |
atttggtttccggtgataaaagtgtgttcggcaaacgatctccgttttggctgaaatttgagtatgttatttttg |
283 |
Q |
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| T |
36967033 |
atttgggttccgatgacaaaagtgtgttcggcaaacgatctccgtttcggctgaaatttgagtatgttatttttg |
36966959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 2281350 - 2281422
Alignment:
| Q |
210 |
tttggtttccggtgataaaagtgtgttcggcaaacgatctccgttttggctgaaatttgagtatgttatttttg |
283 |
Q |
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| T |
2281350 |
tttgggttctggtgacaaaagtgtgtttggcaaacgatctccgtttcggctgaaattt-agtatgttatttttg |
2281422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 73006 - 73060
Alignment:
| Q |
221 |
gtgataaaagtgtgttcggcaaacgatctccgttttggctgaaatttgagtatgtt |
276 |
Q |
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| T |
73006 |
gtgacaaaagtgtgttcg-caaacgatctcggtttcggctgaaatttgagtatgtt |
73060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 17929427 - 17929371
Alignment:
| Q |
226 |
aaaagtgtgttcggcaaacgatctccgttttggctgaaatttgagtatgttattttt |
282 |
Q |
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|||||||||||||||||| || | ||||| |||||||||||||||||||||||| |
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| T |
17929427 |
aaaagtgtgttcggcaaatgactttcgtttcatctgaaatttgagtatgttattttt |
17929371 |
T |
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