View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8316_high_19 (Length: 294)
Name: NF8316_high_19
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 43139613 - 43139329
Alignment:
| Q |
1 |
tagagtgtgttagaaagatagtcttcttcacattttttatttcatacaatccacacagcacagtacagttatcacacacatacataaatatatatatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43139613 |
tagagtgtgttagaaagatagtcttcttcacattttttatttcatacaatccacacagcacaatacagttatcacacacatacataaatatatatatcaa |
43139514 |
T |
|
| Q |
101 |
atttcattaagtattttatttaattgtttttaaccttggacatttcatattatattacaataactatagggaaa--------------ttttacaaatca |
186 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43139513 |
atttcattaagtattttctttaattgtttttaaccttggacatttcatattatattacaataactatagggaaattttccaaatctttttttacaaatca |
43139414 |
T |
|
| Q |
187 |
aggatataattaatcttaaaatttaagtgttactttgtagtaaaggttctatacttatacttatcatttggtccttgcagattta |
271 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43139413 |
aggatataattaatcttaaaatttaagtggtaatttgtagtaaaggttctatacttatacttatcatttggtccttgcagattta |
43139329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University