View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_high_2 (Length: 692)
Name: NF8316_high_2
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 19 - 573
Target Start/End: Complemental strand, 32826147 - 32825607
Alignment:
| Q |
19 |
caccttctcaacaatcttccccttctttcaccgaatggcgatccgcacgcgccaccttctacgcccaggtagatccacgtgacacagtcggcggcgcgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32826147 |
caccttctcaacaatcttccccttctttcaccgaatggcgatccgcacgcgccaccttctacgcccaggtagatccacgtgacacagtcggcggcgcgtg |
32826048 |
T |
|
| Q |
119 |
tggctacggagacttaacaaaagccggttacggcatgtcaactgttggtcttagtgaagctttgtttgaacgaggtcagatctgtggcgcgtgctttgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32826047 |
tggctacggagacttaacaaaagccggttacggcatgtcaactgttggtcttagtgaagctttgtttgaacgaggtcagatctgtggcgcgtgctttgaa |
32825948 |
T |
|
| Q |
219 |
ttacggtgtgtggatgatttacggtggtgtattcctggaacttcgattattgttactgctacgaatttctgtgcgccgaattatgggtttactgttgaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32825947 |
ttacggtgtgtggatgatttacggtggtgtattcctggaacttcaattattgttactgctacgaatttctgtgcgccgaattatgggtttacggttgaag |
32825848 |
T |
|
| Q |
319 |
gtggtggacattgtaatcctcctaataagcattttgttcttcctattgatgcttttgagaagatcgctatttggaaagctggtaacatgcctcttcagta |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32825847 |
gtggtggacattgtaatcctcctaataagcattttgttcttcctattgatgcttttgagaagatcgctatttggaaagctggtaacatgcctcttcagta |
32825748 |
T |
|
| Q |
419 |
tcgtaggtatactagctaactactctttcgttttgacctttgcatgttgtgaattgcaatgcttgttgattactcgaattgaaactaatctaattgtttg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32825747 |
tcgtaggtatactagctaactactctttcgttttgagct--------------ttgcaatggttgttgattactcgaattgaaactaatctaattgtttg |
32825662 |
T |
|
| Q |
519 |
aactgattgttgtttctaaattctaacaattgttgtgaagcatgatctcataata |
573 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32825661 |
aagtgattgttgtttctaaattctaacaattgttgtgaagcatgatctcataata |
32825607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 268 - 409
Target Start/End: Original strand, 29069047 - 29069191
Alignment:
| Q |
268 |
ttgttactgctacgaatttctgtgcgccgaattatgggtttactgttgaaggtg---gtggacattgtaatcctcctaataagcattttgttcttcctat |
364 |
Q |
| |
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||||||||||||||| ||| ||||| || |||||||||||| || ||| ||| ||||| |||||||||||||||| |||||||||| ||||| | |
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| T |
29069047 |
ttgttactgctacgagtttttgtgctcctaattatgggtttgatgctgagagtgacggtggatattgtaatcctcctaagcagcattttgtgcttccggt |
29069146 |
T |
|
| Q |
365 |
tgatgcttttgagaagatcgctatttggaaagctggtaacatgcc |
409 |
Q |
| |
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||| |||||||||||||| ||||||||||||| ||||||||||| |
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| T |
29069147 |
tgaagcttttgagaagattgctatttggaaaggaggtaacatgcc |
29069191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 565 - 612
Target Start/End: Complemental strand, 36314682 - 36314635
Alignment:
| Q |
565 |
ctcataataatgtgacaaaatgacatatttcaatgtaatcatgtgtgt |
612 |
Q |
| |
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||||||||||| ||| |||||||||||||||||||||||||| ||||| |
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| T |
36314682 |
ctcataataatttgagaaaatgacatatttcaatgtaatcatatgtgt |
36314635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 612
Target Start/End: Complemental strand, 21247788 - 21247744
Alignment:
| Q |
568 |
ataataatgtgacaaaatgacatatttcaatgtaatcatgtgtgt |
612 |
Q |
| |
|
|||||||| ||| |||||||| || |||||||||||||||||||| |
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| T |
21247788 |
ataataatttgagaaaatgacgtaattcaatgtaatcatgtgtgt |
21247744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 612
Target Start/End: Complemental strand, 38134458 - 38134414
Alignment:
| Q |
568 |
ataataatgtgacaaaatgacatatttcaatgtaatcatgtgtgt |
612 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
38134458 |
ataataatttgagaaaatgacataattcaatgtaatcatatgtgt |
38134414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 612
Target Start/End: Complemental strand, 18513293 - 18513249
Alignment:
| Q |
568 |
ataataatgtgacaaaatgacatatttcaatgtaatcatgtgtgt |
612 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||||||| ||||| |
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| T |
18513293 |
ataataatttgagaaaatgacataattcaatgtaatcatatgtgt |
18513249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 612
Target Start/End: Original strand, 18570979 - 18571023
Alignment:
| Q |
568 |
ataataatgtgacaaaatgacatatttcaatgtaatcatgtgtgt |
612 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
18570979 |
ataataatttgagaaaatgacataattcaatgtaatcatatgtgt |
18571023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 612
Target Start/End: Original strand, 3921674 - 3921718
Alignment:
| Q |
568 |
ataataatgtgacaaaatgacatatttcaatgtaatcatgtgtgt |
612 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||||||||| |||| |
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| T |
3921674 |
ataataatttgagaaaatgacataattcaatgtaatcatgcgtgt |
3921718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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