View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8316_high_20 (Length: 288)
Name: NF8316_high_20
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 279
Target Start/End: Original strand, 3572810 - 3573086
Alignment:
| Q |
3 |
gcacaaagcatccttgctatatgggctgtccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatc |
102 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| |||||||| ||||| | |
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| T |
3572810 |
gcacaaagcatccttgctatatgggctgtccaagttatcttaatgggtgctgttgagggttatcgtattgcaggtggacctctcggtgaggttgtcgacc |
3572909 |
T |
|
| Q |
103 |
cactctatccaggtggaagctttgacccattaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagc |
202 |
Q |
| |
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||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572910 |
cactctacccaggtggtagttttgacccattaggcctagctgatgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagc |
3573009 |
T |
|
| Q |
203 |
tatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccacc |
279 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573010 |
tatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccacc |
3573086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 3576092 - 3576368
Alignment:
| Q |
1 |
acgcacaaagcatccttgctatatgggctgtccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcga |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576092 |
acgcacaaagtatccttgctatatgggctgtccaagttatcttaatgggagctgttgagggttaccgtattgccggtggacctcttggtgaggtagtcga |
3576191 |
T |
|
| Q |
101 |
tccactctatccaggtggaagctttgacccattaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggtta |
200 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| || |
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| T |
3576192 |
cccactctacccaggtggaagctttgacccattgggcctcgctgacgacccagaggcttttgcagagttaaaggtgaaagaacttaagaatggtaggcta |
3576291 |
T |
|
| Q |
201 |
gctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgacca |
277 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| || |||||||||||||| |||||| ||||||| ||||| ||||| |
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|
| T |
3576292 |
gctatgttctctatgtttggattcttcgttcaggccattgtaaccggaaagggacctctagagaaccttgccgacca |
3576368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 278
Target Start/End: Complemental strand, 3585124 - 3584849
Alignment:
| Q |
3 |
gcacaaagcatccttgctatatgggctgtccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatc |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
3585124 |
gcacaaagcatccttgctatttgggctgtccaagttatcttaatgggagctgttgaaggttaccgtattgccggtggacctcttggtgaggtagtcgacc |
3585025 |
T |
|
| Q |
103 |
cactctatccaggtggaagctttgacccattaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
3585024 |
cactctatccaggtggaagctttgacccattgggccttgctgaggaccccgaggcttttgcagagttaaaggttaaagaactcaagaatggtaggttagc |
3584925 |
T |
|
| Q |
203 |
tatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccac |
278 |
Q |
| |
|
||||| || ||||||||||||||||||||||| || || |||||||| |||||| || | || |||||||||||| |
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|
| T |
3584924 |
gatgttctctatgtttggattctttgttcaagccatcgtgaccggaaagggacctttaaaaaaccttgctgaccac |
3584849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 3577948 - 3578225
Alignment:
| Q |
1 |
acgcacaaagcatccttgctatatgggctgtccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcga |
100 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| || |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
3577948 |
acgcacaaagcatccttgctatttgggttgtcctagctatcttaatgggagctgttgagggttaccgtattgccgatggacctcttggtgaggtagtcga |
3578047 |
T |
|
| Q |
101 |
tccactctatccaggtggaagctttgacccattaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggtta |
200 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
3578048 |
tccactctaccccggtggaagctttgacccattgggcctcgcagacgacccagaggcttttgcagagttaaaggttaaagaactcaagaatggcaggtta |
3578147 |
T |
|
| Q |
201 |
gctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccac |
278 |
Q |
| |
|
|||||||| || ||||||||||| || ||||| || |||||||||| ||| ||||| ||||||| |||||||||||| |
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|
| T |
3578148 |
gctatgttctcgatgtttggatttttcgttcaggccattgtaaccgaaaagggaccactagagaaccttgctgaccac |
3578225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 3 - 279
Target Start/End: Original strand, 3569763 - 3570039
Alignment:
| Q |
3 |
gcacaaagcatccttgctatatgggctgtccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatc |
102 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||||| ||||||||||| || ||||||||||||| |
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|
| T |
3569763 |
gcacaaagcatccttgctatatgggcagtccaagttatcttaatgggcgccgtggagggttaccgtattgctggtggacctctaggcgaggtagtcgatc |
3569862 |
T |
|
| Q |
103 |
cactctatccaggtggaagctttgacccattaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagc |
202 |
Q |
| |
|
||||||| |||||||| ||||||||||| || ||||| || || || || ||||||||||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
3569863 |
cactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaaggtgaaagaactaaaaaatggtaggttagc |
3569962 |
T |
|
| Q |
203 |
tatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccacc |
279 |
Q |
| |
|
|||||| || |||||||||||||| ||||| || ||||| |||||||| |||||||| ||||| || |||||||||| |
|
|
| T |
3569963 |
tatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacctcgctgaccacc |
3570039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 3 - 279
Target Start/End: Original strand, 3564115 - 3564391
Alignment:
| Q |
3 |
gcacaaagcatccttgctatatgggctgtccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || || | |
|
|
| T |
3564115 |
gcacaaagcatccttgctatatgggctgtccaagttatcttaatgggtgctgttgagggttaccgtattgctggtggacctctcggtgaggtggttgacc |
3564214 |
T |
|
| Q |
103 |
cactctatccaggtggaagctttgacccattaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagc |
202 |
Q |
| |
|
||||||| |||||||| ||||||||||| || ||||| || || || || ||||||||||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
3564215 |
cactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaaggtgaaagaactaaaaaatggtaggttagc |
3564314 |
T |
|
| Q |
203 |
tatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccacc |
279 |
Q |
| |
|
|||||| || ||||||||||| || |||||||| ||||| || ||||| |||||||| ||||| || || ||||||| |
|
|
| T |
3564315 |
tatgttctctatgtttggatttttcgttcaagccattgtgactggaaagggacctatcgagaacctcgccgaccacc |
3564391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 3 - 279
Target Start/End: Original strand, 13276041 - 13276317
Alignment:
| Q |
3 |
gcacaaagcatccttgctatatgggctgtccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatc |
102 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| | || | |
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|
| T |
13276041 |
gcacaaagcatccttgccatatgggcctgccaagttatcttgatgggtgctgttgagggttaccgtattgctggtggacctcttggtgaggtgattgacc |
13276140 |
T |
|
| Q |
103 |
cactctatccaggtggaagctttgacccattaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagc |
202 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| || || || || |||||||| ||||||| |||||| || |||||||| | || ||||| |||||||| |
|
|
| T |
13276141 |
cactctacccaggtggtagcttcgacccattgggtctcgccgatgacccagaagcttttgtagagttgaaagtgaaagagattaagaatggtaggttagc |
13276240 |
T |
|
| Q |
203 |
tatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgctgaccacc |
279 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||| |||||||| |||||| | || || ||||||||||||| |
|
|
| T |
13276241 |
catgttttctatgtttggattcttcgttcaagccattgtgaccggaaagggacctttggaaaaccttgctgaccacc |
13276317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 38357136 - 38357398
Alignment:
| Q |
9 |
agcatccttgctatatgggctgtccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatccactct |
108 |
Q |
| |
|
||||| ||||| || |||||| |||||||||||| ||||| ||||| || |||||||||||||| ||||| |||||||||||||| || || ||||| | |
|
|
| T |
38357136 |
agcattcttgccatctgggctacccaagttatcttgatgggcgctgttgaaggttaccgtattgctggtggtcctcttggtgaggttgttgacccactat |
38357235 |
T |
|
| Q |
109 |
atccaggtggaagctttgacccattaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgtt |
208 |
Q |
| |
|
| ||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| || |||||||| || || || ||||| ||||| |
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|
| T |
38357236 |
acccaggaggcagctttgacccattgggcctagctgacgacccagaggctttcgcagagttgaaggttaaggaactcaagaacggtagattagccatgtt |
38357335 |
T |
|
| Q |
209 |
ttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatcttgc |
271 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||| |||||||| |||||| | ||||| ||||| |
|
|
| T |
38357336 |
ctctatgttcggattctttgttcaggctattgtgaccggaaagggacctttggagaaccttgc |
38357398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 33992739 - 33992644
Alignment:
| Q |
174 |
gtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatctt |
269 |
Q |
| |
|
||||| ||| ||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||| || || ||||||||| | ||||||||| |
|
|
| T |
33992739 |
gtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaaaggacctttggagaatctt |
33992644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 42603065 - 42603165
Alignment:
| Q |
141 |
gctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattg |
240 |
Q |
| |
|
||||| ||||| || || || |||||||| ||||| || |||||||| || || | || |||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
42603065 |
gctgatgaccccgatgcattcgcagagttgaaggtcaaggaactcaagaacggccgattggctatgttctccatgtttggtttctttgttcaagccattg |
42603164 |
T |
|
| Q |
241 |
t |
241 |
Q |
| |
|
| |
|
|
| T |
42603165 |
t |
42603165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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