View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_high_28 (Length: 245)
Name: NF8316_high_28
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 17986207 - 17986423
Alignment:
| Q |
18 |
attagctacttctattgaacaatttcctcaaagtagaacccaccacaattgatttttgacactctttgaaacacgcacaaccaacaaaaacttctgcaaa |
117 |
Q |
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| T |
17986207 |
attagctacttctattgaacaatttcctcaaagtagaacccaccacaattgatttttgacactctttgaaacacgcacaaccaacaaaaacttctacaaa |
17986306 |
T |
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| Q |
118 |
agaaaagggagaattgctctatggatccctaagttttactcaaaagtcactctatttatcggaaagtaatgggaagcaacttcccattgcacaaaaccta |
217 |
Q |
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| T |
17986307 |
agaaaagggagaattgctctatggatccctaagttttactcaaaagtcactctatttatcggaaagtaatgggaagcaacttcccattgcacaaaaccta |
17986406 |
T |
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| Q |
218 |
tcaaatgatacgttctt |
234 |
Q |
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| T |
17986407 |
tcaaatgatacgttctt |
17986423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 17968964 - 17969108
Alignment:
| Q |
18 |
attagctacttctattgaacaatttcctcaaagtagaacccaccacaattgatttttgacactctttgaaacacgcacaaccaacaaaaacttctgcaaa |
117 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
17968964 |
attagctacttccattgaacaattttctcaaagtagaacccaccacaattgatttttgacactctttgaaacacgcacaaccaacaaaaacttttacaaa |
17969063 |
T |
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| Q |
118 |
agaaaagggagaattgctctatggatccctaagttttactcaaaa |
162 |
Q |
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| T |
17969064 |
agaaaagggagaattgttttatggatccctcagttttgctcaaaa |
17969108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 17975026 - 17975137
Alignment:
| Q |
18 |
attagctacttctattgaacaatttcctcaaagtagaacccaccacaattgatttttgacactctttgaaacacgcacaaccaacaaaaacttctgcaaa |
117 |
Q |
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| T |
17975026 |
attagctatttgcattgaacaattttctcaaaata-aacccaccacaattgatctttgacactctttgaaatacgtgcaaccaacaaaaacctctacaga |
17975124 |
T |
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| Q |
118 |
agaaaagggagaa |
130 |
Q |
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| T |
17975125 |
agaaaagtgagaa |
17975137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 17981541 - 17981594
Alignment:
| Q |
123 |
agggagaattgctctatggatccctaagttttactcaaaagtcactctatttat |
176 |
Q |
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| T |
17981541 |
agggagaattgctctatggatcccttagttttgctcaaaagtcactcaatttat |
17981594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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