View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8316_high_30 (Length: 241)

Name: NF8316_high_30
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8316_high_30
NF8316_high_30
[»] chr8 (3 HSPs)
chr8 (18-109)||(8151592-8151682)
chr8 (150-241)||(8151321-8151411)
chr8 (109-143)||(8151451-8151485)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 8151682 - 8151592
Alignment:
Q  18 acaatcaagaagagggtatcgactacgagaaggcatacactcatgtagtttgccttgaaaagattagactcctttcgcaatttgcttgttgc 109  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  8151682 acaatcaagaagagggt-tcgactacgagaagacatacactcatgtagtccgccttgaaaagattagactcctttcgcgatttgcttgttgc 8151592  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 150 - 241
Target Start/End: Complemental strand, 8151411 - 8151321
Alignment:
Q  150 atgaccaatcgttaaatattcgtatatttaatccatgtggcccccttgttttatttatcctaaaaaatagacctatttatcattctaaatat 241  Q
    |||||||||| || |||||| ||  |||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8151411 atgaccaatcattgaatatttgtgcatttaatccatgtcacccc-ttgttttatttatcctaaaaaatagacctatttatcattctaaatat 8151321  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 8151485 - 8151451
Alignment:
Q  109 ccaagattatatttttaaattaatgaagattctct 143  Q
    ||||||||||||||| |||||||||||||||||||    
T  8151485 ccaagattatattttaaaattaatgaagattctct 8151451  T

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