View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_high_32 (Length: 239)
Name: NF8316_high_32
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_high_32 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8430171 - 8430394
Alignment:
| Q |
1 |
ttcagccagttgtacacacaggaacttcagtgcttcgcagaattaaggtactcaattaaatgcttatatnnnnnnnntgtacgcaattaagtgtatcgga |
100 |
Q |
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| T |
8430171 |
ttcagccagttgtacacacaggaacttcagtgcttcgcagaattaaggtactcaattaaatgcttatataaaaaaaatgtaagcaattaagtgtatcgga |
8430270 |
T |
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| Q |
101 |
ttagataactgcagtgtttttaaatatccgctatactggcactatacagcgatagcatggacaaaccgttgttatgtgatacgctagttaatcatcatct |
200 |
Q |
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| T |
8430271 |
ttagataactgcagtgtttttaaatatccgctatactggcactatacagcgatagcatggacaaaccgttgttatgtgatacgctagttaatcatcatct |
8430370 |
T |
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| Q |
201 |
tttttgcccactgtggtggttgtt |
224 |
Q |
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| T |
8430371 |
tttttgcctactgtggtggttgtt |
8430394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7377 - 7142
Alignment:
| Q |
1 |
ttcagccagttgtacacacaggaacttcagtgcttcgcagaattaaggtactcaattaaatgcttatatnnnnnnnntgtacgcaattaa-----gtgta |
95 |
Q |
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| T |
7377 |
ttcagccagttgtacacacaggaacttcagtgcttcgcagaattaaggtactcaattaaatgcttatataaaaaaaatgtacgcaattaaattaagtgta |
7278 |
T |
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| Q |
96 |
tcggattagataactgcagtgtttttaaatatccgctatactggcactatacagcgatagca----------tggacaaaccgttgttatgtgatacgct |
185 |
Q |
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| T |
7277 |
tcggattagataactgcagtgtttttaaatatccgctatactggcactatacagcgataccatagcagaatgtggacaaaccgttgttatgtgatacgct |
7178 |
T |
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| Q |
186 |
agttaatcatcatcttttttgcccactgtggtggtt |
221 |
Q |
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| T |
7177 |
agttaatcatcatcttttttgcctactgtggtggtt |
7142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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