View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_high_38 (Length: 227)
Name: NF8316_high_38
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39092501 - 39092281
Alignment:
| Q |
1 |
ccatgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcaccaacaacccattcctagcacatcaaaccaaaaccaaatcaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39092501 |
ccatgggatctccgattccttccacttgaaaccatccaaaaaggccttctttttcaccaacaacccattcctagcacatcaaaccaaaaccaaatcaacc |
39092402 |
T |
|
| Q |
101 |
atttgaaacaaacactttccacaacactttcctatttcccacccttaacgggccgtcttataatcacccaacacaacgtgaccacaaacaacaacaataa |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39092401 |
atttgaaacaaaccctttccacaacactttcctatttcccacccttaacgggccgtcttataatcacccaacacaacgtgaccacaaacaacaacaacaa |
39092302 |
T |
|
| Q |
201 |
cacatcatgttccatcatttg |
221 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
39092301 |
cacatcatgttccatcctttg |
39092281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39071982 - 39071780
Alignment:
| Q |
1 |
ccatgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcaccaacaacccattcctagcacatcaaaccaaaaccaaatcaacc |
100 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||| ||||||| |||||||||||||||||||| |
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| T |
39071982 |
ccatgggatctccaattccttccacttgaaaccatccaaagaggccatcttttccaccaac---ccattcc---------aaaccaaaaccaaatcaacc |
39071895 |
T |
|
| Q |
101 |
atttgaaacaaacactttccacaacactttcctatttcccacccttaacgggccgtcttataatcacccaacacaacgtgaccacaaacaacaacaataa |
200 |
Q |
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| T |
39071894 |
atttgaaacaaacactttctacaacactctcttatttcccacccttaa---gccgtcttataatcacccaacacaacgtgaccacaaacaacaac---aa |
39071801 |
T |
|
| Q |
201 |
cacatcatgttccatcatttg |
221 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
39071800 |
cacatcatgttccataatttg |
39071780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 39089025 - 39088890
Alignment:
| Q |
80 |
caaaccaaaaccaaatcaaccatttgaaacaaacactttccacaacactttcctatttcccacccttaacgggccgtcttataatcacccaacacaacgt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
39089025 |
caaaccaaaaccaaatcaaccatttgaaacaaacactttccacaacactttcctatttcccacccttaacaggccgtcttataatcacccaacacaatgt |
39088926 |
T |
|
| Q |
180 |
gaccacaaacaacaacaataacacatcatgttccatcatttg |
221 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
39088925 |
gaccacaaacaac------aacacatcatgttccatcatttg |
39088890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 39083386 - 39083264
Alignment:
| Q |
80 |
caaaccaaaaccaaatcaaccatttgaaacaaacactttccacaacactttcctatttcccacccttaacgggccgtcttataatcacccaacacaacgt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |
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|
| T |
39083386 |
caaaccaaaaccaaatcaaccatttgaaacaaacactttctacaacactttcctatttcccactcttaacaggccgtctcataatcacccaacacaacgt |
39083287 |
T |
|
| Q |
180 |
gaccacaaacaacaacaataaca |
202 |
Q |
| |
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|||||||||||||||||| |||| |
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|
| T |
39083286 |
gaccacaaacaacaacaacaaca |
39083264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 39083443 - 39083384
Alignment:
| Q |
1 |
ccatgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcaccaa |
60 |
Q |
| |
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||||||||||| | ||| || ||||||||||||||||||| |||||||||||| |||||| |
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| T |
39083443 |
ccatgggatcttcaatttctcccacttgaaaccatccaaaaaggccttcttttccaccaa |
39083384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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