View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8316_high_4 (Length: 460)

Name: NF8316_high_4
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8316_high_4
NF8316_high_4
[»] chr1 (10 HSPs)
chr1 (14-443)||(42819040-42819466)
chr1 (162-204)||(17468320-17468362)
chr1 (162-204)||(52961558-52961600)
chr1 (161-197)||(7652301-7652337)
chr1 (163-202)||(33156947-33156986)
chr1 (162-204)||(7826097-7826139)
chr1 (162-204)||(20208592-20208634)
chr1 (162-204)||(25713369-25713411)
chr1 (162-204)||(26173522-26173564)
chr1 (162-204)||(35772240-35772282)
[»] chr2 (4 HSPs)
chr2 (221-305)||(4239789-4239872)
chr2 (161-204)||(10523229-10523272)
chr2 (161-194)||(25082602-25082635)
chr2 (162-204)||(16419478-16419520)
[»] chr8 (9 HSPs)
chr8 (162-202)||(34236714-34236754)
chr8 (162-204)||(29907792-29907834)
chr8 (162-211)||(38447493-38447542)
chr8 (162-209)||(422283-422330)
chr8 (101-204)||(24532426-24532529)
chr8 (162-204)||(5590434-5590476)
chr8 (162-211)||(8466554-8466603)
chr8 (164-204)||(5940034-5940074)
chr8 (162-194)||(28213169-28213201)
[»] chr6 (9 HSPs)
chr6 (162-202)||(6543009-6543049)
chr6 (132-192)||(6054157-6054217)
chr6 (162-204)||(3680222-3680264)
chr6 (162-204)||(8567024-8567066)
chr6 (162-204)||(12199871-12199913)
chr6 (162-204)||(12330356-12330398)
chr6 (168-214)||(19648305-19648351)
chr6 (101-206)||(19639118-19639223)
chr6 (162-202)||(4906784-4906824)
[»] chr5 (4 HSPs)
chr5 (162-206)||(18333531-18333575)
chr5 (162-204)||(1564633-1564675)
chr5 (162-204)||(15480298-15480340)
chr5 (162-194)||(18885447-18885479)
[»] chr3 (5 HSPs)
chr3 (162-197)||(46794037-46794072)
chr3 (162-204)||(45138868-45138910)
chr3 (107-204)||(38791461-38791558)
chr3 (162-204)||(22729076-22729118)
chr3 (162-204)||(34992526-34992568)
[»] chr7 (7 HSPs)
chr7 (162-204)||(32879681-32879723)
chr7 (152-206)||(14540797-14540851)
chr7 (162-204)||(32278951-32278993)
chr7 (152-193)||(10221658-10221699)
chr7 (162-211)||(23796250-23796299)
chr7 (161-197)||(28080648-28080684)
chr7 (161-197)||(36993139-36993175)
[»] chr4 (5 HSPs)
chr4 (162-204)||(44118925-44118967)
chr4 (164-206)||(42662437-42662479)
chr4 (163-197)||(44249096-44249130)
chr4 (163-204)||(28208401-28208442)
chr4 (162-194)||(400631-400663)
[»] scaffold0766 (1 HSPs)
scaffold0766 (162-204)||(6250-6292)
[»] scaffold0692 (1 HSPs)
scaffold0692 (162-204)||(5820-5862)
[»] scaffold0129 (2 HSPs)
scaffold0129 (162-204)||(14514-14556)
scaffold0129 (162-203)||(14280-14321)


Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 443
Target Start/End: Complemental strand, 42819466 - 42819040
Alignment:
Q  14 atgagatgaaaatggtaacatgtgatagcggaccctaatagtaaatagtgggtggttaaatgaattttggaggaggcgttgatatcaaaatcatggttgg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42819466 atgagatgaaaatggtaacatgtgatagcggaccctaatagtaaatagtgggtggttaaatgaattttggaggaggcgttgatatcaaaatcatggttgg 42819367  T
Q  114 gcctaacacaccctagctaaactgatttatggggtaatgattgtcgttacttataaacacattgtcagaccatctcttatccgaagtgggattttttaca 213  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42819366 gcctaacacaccctagctaaaccgatttatgaggtgatgattgtcgtcacttataaacacattgtcagaccatctcttatccgaagtgggaatttttaca 42819267  T
Q  214 agcttataaaaattgaaccaaattgtgtctaatcaatttccaagattgcatcttcaagaaccacttagcttctaaacttcacctgcaacatatgtagaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42819266 agcttataaaaattgaaccaaattgtgtctaatcaatttccaagattgcatcttcaagaaccacttagcttctaaacttcacctgcaacatatgtagaaa 42819167  T
Q  314 gtctttttatacgaatcaatcaaaggcctgcagtatatgtagcaagtctttttatatgaatcatcaatcaatatcagaaagnnnnnnnnntacactcctt 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||         ||||||||||    
T  42819166 gtctttttatacgaatcaatcaaaggcctgcagtatatgtagcaagtctttttatatga---atcaatcaatatcagaaagaaaaaaaaatacactcctt 42819070  T
Q  414 taagtagaagtctttacaaggaaactagtg 443  Q
    ||||||||||||||||||||||||||||||    
T  42819069 taagtagaagtctttacaaggaaactagtg 42819040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 17468362 - 17468320
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  17468362 acttataaacatattgtcagaccatctcttatccgatgtggga 17468320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 52961600 - 52961558
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||||||||||| ||||||| ||||||    
T  52961600 acttataaacacattgtcagaccatctcctatccgatgtggga 52961558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 7652337 - 7652301
Alignment:
Q  161 tacttataaacacattgtcagaccatctcttatccga 197  Q
    |||||||||||||||||||||||||||| ||||||||    
T  7652337 tacttataaacacattgtcagaccatcttttatccga 7652301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 33156986 - 33156947
Alignment:
Q  163 cttataaacacattgtcagaccatctcttatccgaagtgg 202  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  33156986 cttataaacacattgtcagaccatctcctatccgatgtgg 33156947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 7826097 - 7826139
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||    
T  7826097 acttataaacacattgtcagaccatcttttattcgatgtggga 7826139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 20208592 - 20208634
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    ||||||||||||||||||||||||| || ||||||| ||||||    
T  20208592 acttataaacacattgtcagaccatgtcctatccgatgtggga 20208634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 25713411 - 25713369
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||||||||| | ||||||| ||||||    
T  25713411 acttataaacacattgtcagaccatcacctatccgatgtggga 25713369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 26173522 - 26173564
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||||||||||| |||| || ||||||    
T  26173522 acttataaacacattgtcagaccatctcatatctgatgtggga 26173564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 35772282 - 35772240
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||    
T  35772282 acttataaacacattgtcaggccatctcctatccgatgtggga 35772240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 4239872 - 4239789
Alignment:
Q  221 aaaaattgaaccaaattgtgtctaatcaatttccaagattgcatcttcaagaaccacttagcttctaaacttcacctgcaacata 305  Q
    ||||||||||| ||||  |||| ||| |||||| ||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  4239872 aaaaattgaacaaaatc-tgtccaattaatttctaagtttgcatcttcaagaaccacttagcttctaagctttacctgcaacata 4239789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 10523272 - 10523229
Alignment:
Q  161 tacttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  10523272 tacttaaaaacacattgtcagaccatctcttatccgatgtggga 10523229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 25082602 - 25082635
Alignment:
Q  161 tacttataaacacattgtcagaccatctcttatc 194  Q
    ||||||||||||||||||||||||||||||||||    
T  25082602 tacttataaacacattgtcagaccatctcttatc 25082635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 16419520 - 16419478
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    ||||||||||||||||||||||||| || ||||||| ||||||    
T  16419520 acttataaacacattgtcagaccatgtcctatccgatgtggga 16419478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 34236714 - 34236754
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtgg 202  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  34236714 acttataaacacattgtcagaccatctcttatccgatgtgg 34236754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 29907792 - 29907834
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  29907792 acttataaacacattgtcagactatctcttatccgatgtggga 29907834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 38447493 - 38447542
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtgggatttttta 211  Q
    |||||||||||||||||||| ||||||||||||||  |||||||| ||||    
T  38447493 acttataaacacattgtcaggccatctcttatccgttgtgggattcttta 38447542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 422283 - 422330
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtgggattttt 209  Q
    |||| ||||||||||||||||||||||| ||||||| |||||| ||||    
T  422283 acttttaaacacattgtcagaccatctcctatccgatgtgggactttt 422330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 24532426 - 24532529
Alignment:
Q  101 aaatcatggttgggcctaacacaccctagctaaactgatttatggggtaatgattgtcgttacttataaacacattgtcagaccatctcttatccgaagt 200  Q
    ||||||||||||||||||||||| ||   | |||| |  || || ||| ||||||| |   |||||||||||||||||||| ||||||| ||||||| ||    
T  24532426 aaatcatggttgggcctaacacaaccccacaaaaccggcttgtgaggtgatgattgcccccacttataaacacattgtcaggccatctcctatccgatgt 24532525  T
Q  201 ggga 204  Q
    ||||    
T  24532526 ggga 24532529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 5590434 - 5590476
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||    
T  5590434 acttgtaaacacattgtcagaccatctcctatccgatgtggga 5590476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 8466554 - 8466603
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtgggatttttta 211  Q
    |||||||||||| |  |||||||||||||||||||| |||||||| ||||    
T  8466554 acttataaacacttgttcagaccatctcttatccgatgtgggattcttta 8466603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 5940074 - 5940034
Alignment:
Q  164 ttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    ||||||||||||||||| ||||||||| |||||| ||||||    
T  5940074 ttataaacacattgtcaaaccatctctcatccgatgtggga 5940034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 28213169 - 28213201
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatc 194  Q
    |||||||||||||||||||||||||||| ||||    
T  28213169 acttataaacacattgtcagaccatctcatatc 28213201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 6543009 - 6543049
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtgg 202  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  6543009 acttataaacacattgtcagaccatctcttatccgatgtgg 6543049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 6054217 - 6054157
Alignment:
Q  132 aaactgatttatggggtaatgattgtcgttacttataaacacattgtcagaccatctctta 192  Q
    ||||||| ||||| ||| ||||||||| | ||||||||||| ||||||||||||| |||||    
T  6054217 aaactgacttatgaggtgatgattgtcctcacttataaacagattgtcagaccatatctta 6054157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 3680264 - 3680222
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||||||||| | ||||||| ||||||    
T  3680264 acttataaacacattgtcagaccatcacatatccgatgtggga 3680222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 8567024 - 8567066
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||||||||| | ||||||| ||||||    
T  8567024 acttataaacacattgtcagaccatcacctatccgaggtggga 8567066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 12199871 - 12199913
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    ||||||||||| ||||||||||||| |||||||||| ||||||    
T  12199871 acttataaacatattgtcagaccatatcttatccgatgtggga 12199913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 12330356 - 12330398
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    ||||||||||||||||||||||||| || ||||||| ||||||    
T  12330356 acttataaacacattgtcagaccatgtcctatccgatgtggga 12330398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 19648351 - 19648305
Alignment:
Q  168 aaacacattgtcagaccatctcttatccgaagtgggattttttacaa 214  Q
    |||||||||||||||||||||| ||||||| |||||| |||| ||||    
T  19648351 aaacacattgtcagaccatctcatatccgatgtgggacttttaacaa 19648305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 19639118 - 19639223
Alignment:
Q  101 aaatcatggttgggcctaacacaccctagctaaactgatttatggggtaatgattgtcgttacttataaacacattgtcagaccatctcttatccgaagt 200  Q
    ||||| ||||||| ||||||||| ||   |||||| | ||| || ||| | |||||||   |||||||||||||||||||| |||| |||||||| | ||    
T  19639118 aaatcgtggttggacctaacacagccccactaaaccggtttgtgaggtgaggattgtccccacttataaacacattgtcaggccatatcttatcctatgt 19639217  T
Q  201 gggatt 206  Q
    ||||||    
T  19639218 gggatt 19639223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 4906824 - 4906784
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtgg 202  Q
    |||||||||||||||||| ||| ||||||||||||| ||||    
T  4906824 acttataaacacattgtccgacaatctcttatccgatgtgg 4906784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 18333531 - 18333575
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtgggatt 206  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||    
T  18333531 acttataaacacattgtcagaccatctcctatccgatgtgggatt 18333575  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 1564633 - 1564675
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  1564633 acttataatcacattgtcagaccatctcttatccgatgtggga 1564675  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 15480340 - 15480298
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||||||||| | ||||||| ||||||    
T  15480340 acttataaacacattgtcagaccatcacctatccgatgtggga 15480298  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 18885479 - 18885447
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatc 194  Q
    ||||||||||||||||||||||||||| |||||    
T  18885479 acttataaacacattgtcagaccatcttttatc 18885447  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 46794072 - 46794037
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccga 197  Q
    ||||||||||||||||||||||||||||||||||||    
T  46794072 acttataaacacattgtcagaccatctcttatccga 46794037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 45138868 - 45138910
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||| ||||||||||||||||||| ||||||    
T  45138868 acttataaacacattgccagaccatctcttatccgatgtggga 45138910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 38791461 - 38791558
Alignment:
Q  107 tggttgggcctaacacaccctagctaaactgatttatggggtaatgattgtcgttacttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    ||||||||||||||||| ||   | |||  ||||| || ||| | ||||||| | ||||||||| |||||||||||||||||| ||||||| ||||||    
T  38791461 tggttgggcctaacacaaccccacaaaatcgatttgtgaggtgaggattgtcctcacttataaatacattgtcagaccatctcctatccgatgtggga 38791558  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 22729118 - 22729076
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||    
T  22729118 acttgtaaacacattgtcagaccatctcctatccgatgtggga 22729076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 34992568 - 34992526
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||||||||| | ||||||| ||||||    
T  34992568 acttataaacacattgtcagaccatcacctatccgatgtggga 34992526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 32879681 - 32879723
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  32879681 acttataaacacattgtcaggccatctcttaaccgaagtggga 32879723  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 14540797 - 14540851
Alignment:
Q  152 gattgtcgttacttataaacacattgtcagaccatctcttatccgaagtgggatt 206  Q
    ||||||| ||||||||||||||||||||||  |||||| ||||||| ||| ||||    
T  14540797 gattgtccttacttataaacacattgtcaggtcatctcctatccgatgtgtgatt 14540851  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 32278951 - 32278993
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||||||||| | ||||||| ||||||    
T  32278951 acttataaacacattgtcagaccatcacatatccgatgtggga 32278993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 10221658 - 10221699
Alignment:
Q  152 gattgtcgttacttataaacacattgtcagaccatctcttat 193  Q
    ||||||| | ||||||||||||||| ||||||||||||||||    
T  10221658 gattgtcctcacttataaacacattttcagaccatctcttat 10221699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 23796250 - 23796299
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtgggatttttta 211  Q
    ||||||||||||||||| ||||||||| |||||||| || ||| ||||||    
T  23796250 acttataaacacattgttagaccatcttttatccgatgttggacttttta 23796299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 28080684 - 28080648
Alignment:
Q  161 tacttataaacacattgtcagaccatctcttatccga 197  Q
    |||||||||||||||||||||  ||||||||||||||    
T  28080684 tacttataaacacattgtcaggtcatctcttatccga 28080648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 36993139 - 36993175
Alignment:
Q  161 tacttataaacacattgtcagaccatctcttatccga 197  Q
    |||||||||||||||||||||||||| || |||||||    
T  36993139 tacttataaacacattgtcagaccatgtcatatccga 36993175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 44118925 - 44118967
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||| ||||||||||||||| ||||||    
T  44118925 acttataaacacattgtcaggccatctcttatccgatgtggga 44118967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 42662479 - 42662437
Alignment:
Q  164 ttataaacacattgtcagaccatctcttatccgaagtgggatt 206  Q
    |||||||||||||||||||||||||| ||| ||| ||||||||    
T  42662479 ttataaacacattgtcagaccatctcctattcgatgtgggatt 42662437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 44249130 - 44249096
Alignment:
Q  163 cttataaacacattgtcagaccatctcttatccga 197  Q
    |||||||||||||||||||||||||| ||||||||    
T  44249130 cttataaacacattgtcagaccatcttttatccga 44249096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 28208401 - 28208442
Alignment:
Q  163 cttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||| |||||||||||||||| | ||||||    
T  28208401 cttataaacacattgttagaccatctcttatccaatgtggga 28208442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 400631 - 400663
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatc 194  Q
    |||||||||||||||||||||||||||| ||||    
T  400631 acttataaacacattgtcagaccatctcatatc 400663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 6292 - 6250
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||||| |||||||||| || ||||||    
T  6292 acttataaacacattgtcagactatctcttatctgatgtggga 6250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 5820 - 5862
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||||| || |||||||||| ||||||    
T  5820 acttataaacacattgtcagactatgtcttatccgatgtggga 5862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 14556 - 14514
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggga 204  Q
    |||||||||||||||||||||||||| | ||||||| ||||||    
T  14556 acttataaacacattgtcagaccatcacctatccgatgtggga 14514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 14321 - 14280
Alignment:
Q  162 acttataaacacattgtcagaccatctcttatccgaagtggg 203  Q
    |||||||||||||||||||||||||| | ||||||| |||||    
T  14321 acttataaacacattgtcagaccatcacctatccgatgtggg 14280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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