View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_1 (Length: 709)
Name: NF8316_low_1
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 9 - 402
Target Start/End: Original strand, 3685304 - 3685698
Alignment:
| Q |
9 |
gaagcagagatgaaagaattgagactcaaacttaggcaaacaatgaccatgtacaaatcagcttgcaaagaagcaatttcagcccaaaataaggtgatgt |
108 |
Q |
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| T |
3685304 |
gaagcagagatgaaagaattgagactcaaacttaggcaaacaatgaccatgtacaaatcagcttgcaaagaagcaatttcagcccaaaataaggtgatgt |
3685403 |
T |
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| Q |
109 |
aaattacactatcacttactaacatgtggttggtcttacacaaactttttctagtagtgattaatttcatacacaaacttagaaaagataaaa-aggcaa |
207 |
Q |
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| T |
3685404 |
aaattacactatcacttactaacatgtggttggtcttacacaaactttttctagtagtgattaatttcatacacaaacttagaaaagataaaaaaggcaa |
3685503 |
T |
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| Q |
208 |
tgaaaagtgctatgtaatatgaaaaatgagattaaaaggtttcaattattgacaggctaatgagattactcaatggaaaatggaggaggaacgtatggta |
307 |
Q |
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| T |
3685504 |
tgaaaagtgctatgtaatatgaaaaatgagattaaaaggtttcaattattgacaggctaatgagattactcaatggaaaatggaggaggaacgtatggta |
3685603 |
T |
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| Q |
308 |
gaggaagttataatgtcaaaagaagcagcattggcattagcagaaaaggagaaagctaaagcaaaagctgcaatcaaagcagctgatgaagctat |
402 |
Q |
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| T |
3685604 |
gaggaagttataatgtcaaaagaagcagcattggcattagcagaaaaggagaaagctaaagcaaaagctgcaatcaaagcagctgatgaagctat |
3685698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 478 - 690
Target Start/End: Original strand, 3685774 - 3685986
Alignment:
| Q |
478 |
tcaagcactaaatgtgttggctcgtaaagatattcgatatagacaatacaccttagacgaaattgaaaaggctactcaaaatttctcattatcaatgaaa |
577 |
Q |
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| T |
3685774 |
tcaagcactaaatgtgttggctcgtaaagatattcgatatagacaatacaccttagacgaaattgaaaaggctactcaaaatttctcattatcaatgaaa |
3685873 |
T |
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| Q |
578 |
ataggtgaaggtggatatggacctgtgtttaaaggtcaacttgatcatacaaatgttgcaatcaaaattttaaggcctgatgctaaccagggtagaaaac |
677 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| |
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| T |
3685874 |
ataggtgaaggtggatatggacctgtgtttaaaggtcaacttgatcatacaaatgttgcaatcaaaattttaagacctgatgccaatcagggtagaaaac |
3685973 |
T |
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| Q |
678 |
agttcctacaaga |
690 |
Q |
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| T |
3685974 |
agttcctacaaga |
3685986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 624
Target Start/End: Complemental strand, 48236610 - 48236554
Alignment:
| Q |
568 |
atcaatgaaaataggtgaaggtggatatggacctgtgtttaaaggtcaacttgatca |
624 |
Q |
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| T |
48236610 |
atcaaagaaactaggtgaaggtggatacggacctgtgtttaaaggtcaccttcatca |
48236554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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