View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_10 (Length: 381)
Name: NF8316_low_10
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 13646549 - 13646184
Alignment:
| Q |
11 |
cagagatagtcttgaattgaagcttagggtaacattctaaaagagcttgaatatcatcattgaattgtatgagtcggttatggatgtattcagtgttgag |
110 |
Q |
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| T |
13646549 |
cagagatagtcttgaattgaagcttagggtaacattctaaaagagcttgaatatcatcattgaattgtatgagtcggttatggatgtatttggtgttgag |
13646450 |
T |
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| Q |
111 |
gaaagttatgtaaatgttttgaattgcaagaagttcagctagctttagcattgaatttacatggccttgtgctggacatgggaagattagcacatgtgga |
210 |
Q |
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| T |
13646449 |
gaaagtgatgtagatgttttgaattgcaagaagttcagctagctttagcattgaatttacatggccttgtgctggacatgggaagattagcacatgtgga |
13646350 |
T |
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| Q |
211 |
gaagatttttccttaggttgtgtttccatttttcgaaaaatcttaattttgtgacctataactttcttgcatatgtaaaattaatgttgtgtggagttat |
310 |
Q |
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| T |
13646349 |
gaagatttttccttaggttgtgtttccatttttcaaaaaatcttaattttgtgacctataactttcttgcatatgtaaaattaatgttgtgtggagttat |
13646250 |
T |
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| Q |
311 |
atatgtattaaggttgcaaaattcaa-------atttgtgatgagttttgagtggtggataatgat |
369 |
Q |
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| T |
13646249 |
atatgtattaaggttgcaaaattcaaattgccgattcgtgatgagttttgagtggtggataatgat |
13646184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 13656875 - 13656646
Alignment:
| Q |
11 |
cagagatagtcttgaattgaagcttagggtaacattctaaaagagcttgaatatcatcattgaattgtatgagtcggttatggatgtattcagtgttgag |
110 |
Q |
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| T |
13656875 |
cagagatggtcttgaattgaagcttagggtaacattctaaaagagcttgaatatcatcattgaattgtatgagtcggttatggatgtatttggtgttgag |
13656776 |
T |
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| Q |
111 |
gaaagttatgtaaatgttttgaattgcaagaagttcagctagctttagcattgaatttacatggccttgtgctggacatgggaagattagcacatgtgga |
210 |
Q |
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| T |
13656775 |
aaaagtgatgtagatgttttgaattgcaagaagttcagctagctttagcattggatttacatggccttgtgctggacatgggaagattagcacatgtggt |
13656676 |
T |
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| Q |
211 |
gaagatttttccttaggttgtgtttccatt |
240 |
Q |
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| T |
13656675 |
aaggattttttcttgggttgtatatccatt |
13656646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 13651630 - 13651432
Alignment:
| Q |
11 |
cagagatagtcttgaattgaagcttagggtaacattctaaaagagcttgaatatcatca---ttgaattgtatgagtcggttatggatgtattcagtgtt |
107 |
Q |
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| T |
13651630 |
cagagatggtcttgaattgaagcttagggtaacattgtgaaattgatttaacatcatcaatattcaaactaatgagtctgttgtggatgtattcagtgtt |
13651531 |
T |
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| Q |
108 |
gaggaaagttatgtaaatgttttgaattgcaagaagttcagctagctttagcattgaatttacatggccttgtgctggacatgggaagattagcacatg |
206 |
Q |
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| T |
13651530 |
taggaatgttatgtgaagattttgaattaaaagaagttcagctagcttgagcattgtgtttacatggccttgtgctggacatgggaagattaacacatg |
13651432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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