View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_12 (Length: 363)
Name: NF8316_low_12
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 190 - 348
Target Start/End: Original strand, 28630270 - 28630428
Alignment:
| Q |
190 |
gaggatgctaatgagttgttaccatttgataattgggatgagcttggatcagttgtgaggtttgctgttgattcacctagtttgtaaatagtataattgt |
289 |
Q |
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| T |
28630270 |
gaggatgctaatgagttgttaccatttgataattgggatgagcttggatcagttgtgaggtttgctgttgattcacctagtttgtaaatagtataattgt |
28630369 |
T |
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| Q |
290 |
catatgtagttttatacttggccatatgtttagattaatagtttggaaatacattaatc |
348 |
Q |
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| T |
28630370 |
catatgtagttatatacttggccatatgtttagattaatagtttggaaatacattaatc |
28630428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 28630102 - 28630260
Alignment:
| Q |
1 |
aacacgagcaccagaatggacaacaatatcgagttcaacataaatcaacaaacatatatcaatttcggtgcaagccatgaacatcatcacgttcatgagg |
100 |
Q |
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| T |
28630102 |
aacacgagcaccagaatggacaacaatatggagttcaacataaatcaacaaacatatatcaatttcggtgcaagccatgaacatcatcacgttcatgagg |
28630201 |
T |
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| Q |
101 |
acaaaccagtcaataactatacaagcagtgaccaaagcaatcagtttcatggaaacaat |
159 |
Q |
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| T |
28630202 |
acaaaccagtcaataactatacaagcagtgaccaaagcaatcagtttcatggaagcaat |
28630260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 282
Target Start/End: Original strand, 28615943 - 28616068
Alignment:
| Q |
157 |
aatgtaacaccatcatcaaatttttggattaaggaggatgctaatgagttgttaccatttgataattgggatgagcttggatcagttgtgaggtttgctg |
256 |
Q |
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| T |
28615943 |
aatgtaacacaatcttcaaatttttggattaagcaagctgctaatgagttattatcatttgataattgggatgagcttggatcagttgtgaattttgttt |
28616042 |
T |
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| Q |
257 |
ttgattcacctagtttgtaaatagta |
282 |
Q |
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| T |
28616043 |
cagattcacctagtatgtaaatagta |
28616068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 28615771 - 28615812
Alignment:
| Q |
24 |
caatatcgagttcaacataaatcaacaaacatatatcaattt |
65 |
Q |
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| T |
28615771 |
caatatggagttgaacacaaatcaacaaacatatatcaattt |
28615812 |
T |
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