View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_13 (Length: 360)
Name: NF8316_low_13
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 6888001 - 6888337
Alignment:
| Q |
11 |
tcgagtttcgtgttctctatttttatttatattattagaattaaaatcaaccttatttaaaccgtttaattttgatcgaacgatcatcgatgtactgact |
110 |
Q |
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| T |
6888001 |
tcgagattcatgttctctatttttatttatattattaaaattaaaatcaaccttatttaaactgtttaattatgatcgaacgatcatcgatgtattgact |
6888100 |
T |
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| Q |
111 |
gcgtgaaagacggaccatgcagaatgatagt-----gtaaattaaaacaattttttactcacggtacattctctctctttcactatttgaaattctgaaa |
205 |
Q |
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| T |
6888101 |
gcgtgaaagacggatcatgcagaatgatagtaatccgtaatttaaaacaattttttactcacggtactttctctctctttcactatttgaaattctgaaa |
6888200 |
T |
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| Q |
206 |
cagtgattaatttccacgttactttgatgtgtatatcagaagatgatgtcaatttgaacaagtactgttgtccacatgcagaataatgaactacagtaca |
305 |
Q |
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| T |
6888201 |
cagtgattaatttccacgttactttgatgtgtatatcagaagatgatgtcaatttgaacaagtactgttgtccacatgcagaataatgaactacagtaca |
6888300 |
T |
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| Q |
306 |
agggattagttttgttccaaaattagaagactatctt |
342 |
Q |
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| T |
6888301 |
agggattagttttgttccaaaattagaagactatctt |
6888337 |
T |
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