View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_15 (Length: 348)
Name: NF8316_low_15
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 103 - 330
Target Start/End: Original strand, 31363014 - 31363241
Alignment:
| Q |
103 |
atatatacacatatagcaggtatttttaatttaagtggcaagagcaagtcctcaatgcatgtaaaaacacttatcggtaagagtgacacctctcatttta |
202 |
Q |
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| T |
31363014 |
atatatatatatatagcatgtatttttaatttaagtggcaagagcaagtcctcaatgcatgtaaaaacacttatcggtaagagtgacacctctcggttta |
31363113 |
T |
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| Q |
203 |
cggacgagttagacccaatataaaaacctaacaaatgtgatcgtgtattcttaactcattttaagatgatagcagcaacagttttagaatgttaaatgat |
302 |
Q |
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| T |
31363114 |
cggatgagttggacacgatataaaaacataacaaatgtgattgtgtattcttaattcattttaagatgagagcaacaacagttttagaaagttaaatgat |
31363213 |
T |
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| Q |
303 |
gaatcaccaagaaattgatgtcacaagt |
330 |
Q |
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| T |
31363214 |
gaatcacgcagaaattgatgtcacaagt |
31363241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 31362895 - 31362985
Alignment:
| Q |
22 |
aaatgagaatgagtgaaaggaagaaacatcgagtggatgtggccatcttatcttaaaactattaac----aagagagaagttcagatatat |
108 |
Q |
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| T |
31362895 |
aaatgagaatgagtgaaaggaagaaacattgagtggatgtggccatcttatcttaaaattattaacaaggaagagagaagttcagatatat |
31362985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 31295331 - 31295394
Alignment:
| Q |
22 |
aaatgagaatgagtgaaaggaagaaacatcgagtggatgtggccatcttatcttaaaactatta |
85 |
Q |
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| T |
31295331 |
aaatgagaatgaatgaaaggaagaaaaattgagtggatctagccatcttatcttaaaattatta |
31295394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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