View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_16 (Length: 337)
Name: NF8316_low_16
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 73 - 329
Target Start/End: Complemental strand, 26017679 - 26017423
Alignment:
| Q |
73 |
atcatcatcacttacctgagtttcaatccgttccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatg |
172 |
Q |
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| T |
26017679 |
atcataatcaattacctgagtttcaattcgttctttttcgtctttccttgaaggtttgtgatccgacgttaaggcctcagcaacacctcctctactgatg |
26017580 |
T |
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| Q |
173 |
acagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaat |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
26017579 |
acagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacacagcaagagccaccattaagatcttcttttaagaaat |
26017480 |
T |
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| Q |
273 |
ctgaatctgttttgaggtaaccatgcttcactgcttcctcaatatcactttcatctc |
329 |
Q |
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| T |
26017479 |
ctgaatctgttttgaggtaaccatgcttcactgcttcctcaatatcactttcatctc |
26017423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 84 - 329
Target Start/End: Complemental strand, 26002856 - 26002611
Alignment:
| Q |
84 |
ttacctgagtttcaatccgttccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatgacagcgcgaca |
183 |
Q |
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| T |
26002856 |
ttacctgagtctcaatccgttctttttcgtctttcctcgaaggtttgtgatctgatgttaaggcttcagcagcacctccatggctgatgacagcacgaca |
26002757 |
T |
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| Q |
184 |
atcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaatctgaatctgtt |
283 |
Q |
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| T |
26002756 |
atcaccggcattggacataacaaggttgccatttctaattaatgctgttacacagcaagaaccaccattaagatcttcttttaagaaatctgaatctgtt |
26002657 |
T |
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| Q |
284 |
ttgaggtaaccatgcttcactgcttcctcaatatcactttcatctc |
329 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
26002656 |
ttgaggtaaccatgtttcactgcttcctcaatatcactctcatctc |
26002611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 319
Target Start/End: Complemental strand, 30374166 - 30373951
Alignment:
| Q |
104 |
tccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatgacagcgcgacaatcgcctgcattggacacaa |
203 |
Q |
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||||||||||||| ||| ||||| |||||||||||||| |||||||||| ||||||||||| || ||||| || ||||| || ||||| ||||||| |
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| T |
30374166 |
tccttttcgtcttcccttgaaggacggtgatcagatgttagtgcctcagcaacccctcctctactaataacagcacggcaatcaccagcattagacacaa |
30374067 |
T |
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| Q |
204 |
caaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaatctgaatctgttttgaggtaaccatgcttcac |
303 |
Q |
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| T |
30374066 |
ctaagttaccattcctaatgaatgctgtcacacaacaagaaccaccatgtagatcttttttcatgaactcagaatcggtattgaggtaaccgcgcttcac |
30373967 |
T |
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| Q |
304 |
tgcttcctcaatatca |
319 |
Q |
| |
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||| ||||||| |||| |
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| T |
30373966 |
tgcctcctcaacatca |
30373951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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