View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_17 (Length: 334)
Name: NF8316_low_17
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 36775533 - 36775218
Alignment:
| Q |
1 |
taagaagaaaagaacccatctgatccattttctgatccaagaatctcagtgcacatttcaagactcttttcactcaaataattttgtgaatttttcacaa |
100 |
Q |
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| T |
36775533 |
taagaagaaaagaacccatctgatccattttctgatccaagaatctcagtgcacatttcaagactcttttcacttaaataattttgtgaatttttcacaa |
36775434 |
T |
|
| Q |
101 |
gtgggtgaatataaggaggagtttttgattgtgaagcttcatctttcnnnnnnngggtcaagagtgaactccatatatccaattcaccagtgactatggt |
200 |
Q |
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| T |
36775433 |
gtgggtgaatataaggaggagtttttgattgtgaagcttcatctttctttttttgggtcaagattgaactccatatatccaattcaccagtgactatggt |
36775334 |
T |
|
| Q |
201 |
ggaatcgtattttttcattggagatgaagataacccattttgagaaccgtttctataactttcagacccgaaaagcaccaccatattttctttgctttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36775333 |
ggaatcgtattttttcattggagatgaagataacccattttgagaaccgtttctatcactttcagacccgaaaagcatcaccatattttctttgctttga |
36775234 |
T |
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| Q |
301 |
acctttttgttagctg |
316 |
Q |
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|||||||||||||||| |
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| T |
36775233 |
acctttttgttagctg |
36775218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 36760215 - 36760025
Alignment:
| Q |
5 |
aagaaaagaacccatctgatccattttctgatccaagaatctcagtgcacatttcaagactcttttcactcaaataattttgtgaatttttcacaagtgg |
104 |
Q |
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| T |
36760215 |
aagaagagaaaccatctgagccagtttctgatccaaggctctcggtgcaaatttcaagactcttagcacttagataattgtttgaatttttcacaagtgg |
36760116 |
T |
|
| Q |
105 |
gtgaatataaggaggagtttttgattgtgaagcttcatctttcnnnnnnngggtcaagagtgaactccatatatccaattcaccagtgact |
195 |
Q |
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| T |
36760115 |
atgaatataaggaggagtttttgattgtgaagcttcatctttgttcttttggttcaagattgaactccatatatccaattcactagtgact |
36760025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 36788211 - 36788029
Alignment:
| Q |
5 |
aagaaaagaacccatctgatccattttctgatccaagaatctcagtgcacatttcaagactcttttcactcaaataattttgtgaatttttcacaagtgg |
104 |
Q |
| |
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||||| |||| |||||||| ||| ||||||||||||| |||| ||||| |||||||||||||| |||| | |||||| | |||||||||||||||||| |
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| T |
36788211 |
aagaagagaaaccatctgagccagtttctgatccaaggctctcggtgcaaatttcaagactcttagcacttagataattgtttgaatttttcacaagtgg |
36788112 |
T |
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| Q |
105 |
gtgaatataaggaggagtttttgattgtgaagcttcatctttcnnnnnnngggtcaagagtgaactccatatatccaattcac |
187 |
Q |
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| T |
36788111 |
atgaatataaggaggagtttttgattgtgaagcttcatctttgttcttttggttcaagattgaactccatatatccaattcac |
36788029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 36796582 - 36796432
Alignment:
| Q |
37 |
ccaagaatctcagtgcacatttcaagactcttttcactcaaataattttgtgaatttttcacaagtgggtgaatataaggaggagtttttgattgtgaag |
136 |
Q |
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|||||| |||| ||||| |||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36796582 |
ccaagactctcggtgcagattttgagactcttttcacttaaatagttttttgaatttttcacaagtgggtgaatataaggaggagtttttgaatgtgaag |
36796483 |
T |
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| Q |
137 |
cttcatctttcnnnnnnngggtcaagagtgaactccatatatccaattcac |
187 |
Q |
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| T |
36796482 |
cttcatctttgttcttttggttcaagattgaactccatatatccaattcac |
36796432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 36760019 - 36759982
Alignment:
| Q |
279 |
caccatattttctttgctttgaacctttttgttagctg |
316 |
Q |
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||||||||||||||||||||||| ||| |||||||||| |
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| T |
36760019 |
caccatattttctttgctttgaatcttgttgttagctg |
36759982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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