View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_22 (Length: 294)
Name: NF8316_low_22
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 44819275 - 44818999
Alignment:
| Q |
1 |
gacttggaagcacttacggctattgcaacttatcgcgtttccggcggagggttaatgttacttcaccaaacacgaccttaatatcatcaattatcttccc |
100 |
Q |
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| T |
44819275 |
gacttggaagcacttacggctattgcaacttatcgcgtttccggcggagggttaatgttacttcaccaaacacgaccttaatatcatcaattatcttccc |
44819176 |
T |
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| Q |
101 |
tacaaggaggaaatggtctagtgttgttgttcgagctcagaactctagcacttattcatctcaagtaaaatctcaatcccnnnnnnnctattttgtttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44819175 |
tacaaggaggaaatggtctagtgttgttgttcgagctcagaactctagcacttattcatctcaagtaaaatctcaatccctttttttctattttgtttca |
44819076 |
T |
|
| Q |
201 |
taattaaactactttgttgctaatacacatgcatatattttattgtgaatggtgtatgtaaaacagaaggaggatat |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44819075 |
taattaaactactttgttgctaatacacatgcatatattttattgtgaatggtgtatgtaaaacagaaggaggatat |
44818999 |
T |
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