View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_25 (Length: 275)
Name: NF8316_low_25
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_25 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 14100145 - 14100411
Alignment:
| Q |
13 |
agatggtgtccaatatttctcgagatgaatggaattgaaagaggttttaaaaaggaagc----aacatcttgattttctctgatcagtttgtttaacatt |
108 |
Q |
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| T |
14100145 |
agatggtgtccaatatttctcgagatgaatggaattgaaagaggttttaaaaaggaagcaagcaacatcttgattttctctgatcagtttgtttaacatt |
14100244 |
T |
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| Q |
109 |
gtttgttttattaagaagtcaaactaatcaatgccatgaaatttgacaccggtgctccaatacaaattcaccaactttgatttttgacattgatctttta |
208 |
Q |
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| T |
14100245 |
gtttgttttattaagaagtcaaactaatccatgccatggaatttgacaccggtgctccaatacaaattcaccaactttgatttttgacattgatctttta |
14100344 |
T |
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| Q |
209 |
aaattaaaactaacagctactccgagttgtaattttgtgaaaaattcatgttgataaaataaattgc |
275 |
Q |
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| T |
14100345 |
aaattaaaactaacagctactccgagttgtaattttgtgaaaaattcatgttgataaaataaattgc |
14100411 |
T |
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