View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_30 (Length: 254)
Name: NF8316_low_30
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 8151281 - 8151043
Alignment:
| Q |
1 |
aaagaaaaaacgagaaaaggttttccaatttggtacgtttctgtactctaaaatttcttttcagctatgcttattcttgtcttggtaaaatatagccgtg |
100 |
Q |
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| T |
8151281 |
aaagaaaaaacgagaaaaggttttccaatttggtacgtttctgtactctaaaatttcttttcagctacgcttattcttgtcttggtaaaatatagcagtg |
8151182 |
T |
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| Q |
101 |
ttattattttgcaattcaattggtggttgtttaggagttgttgtttccggtggttttcatg--nnnnnnnnncttgcggttctgtccttttgagacgatg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8151181 |
ttattattttgcaattcaattggtggttgtttaggagttgttgtttccggtggttttcatgtttttttttttcttgcggttctgtccttttgagacgatg |
8151082 |
T |
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| Q |
199 |
ttgctaactcactgctttagcagtcttgttcttttggtt |
237 |
Q |
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| T |
8151081 |
ttgctaactcactgctttagcagtcttgttcttttggtt |
8151043 |
T |
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