View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8316_low_37 (Length: 239)

Name: NF8316_low_37
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8316_low_37
NF8316_low_37
[»] chr2 (19 HSPs)
chr2 (17-239)||(14131028-14131253)
chr2 (17-131)||(27007152-27007266)
chr2 (17-137)||(13716721-13716852)
chr2 (17-109)||(37714428-37714520)
chr2 (17-109)||(20142973-20143065)
chr2 (17-103)||(3167907-3167993)
chr2 (17-106)||(32976031-32976122)
chr2 (17-109)||(38320211-38320303)
chr2 (17-103)||(35457411-35457497)
chr2 (29-137)||(19945747-19945866)
chr2 (17-100)||(31645107-31645191)
chr2 (38-109)||(24183976-24184047)
chr2 (17-106)||(4434305-4434397)
chr2 (17-75)||(31845453-31845511)
chr2 (48-137)||(37899545-37899645)
chr2 (17-106)||(27407430-27407519)
chr2 (17-80)||(5881442-5881505)
chr2 (99-138)||(32976126-32976165)
chr2 (99-135)||(38320304-38320340)
[»] chr8 (12 HSPs)
chr8 (17-136)||(26415530-26415649)
chr8 (17-109)||(38585099-38585191)
chr8 (16-106)||(29414390-29414480)
chr8 (17-135)||(24068128-24068256)
chr8 (17-87)||(5718458-5718528)
chr8 (17-100)||(33543362-33543444)
chr8 (17-94)||(5686301-5686378)
chr8 (35-127)||(43063881-43063973)
chr8 (17-84)||(25124400-25124467)
chr8 (70-109)||(29543676-29543715)
chr8 (99-133)||(35393710-35393744)
chr8 (99-136)||(36947331-36947368)
[»] chr7 (14 HSPs)
chr7 (17-134)||(46413754-46413874)
chr7 (17-103)||(21882780-21882866)
chr7 (21-106)||(22631488-22631573)
chr7 (17-109)||(23611761-23611852)
chr7 (17-109)||(46297618-46297710)
chr7 (17-97)||(1985023-1985103)
chr7 (17-106)||(20125598-20125687)
chr7 (17-106)||(23730516-23730603)
chr7 (17-106)||(8123699-8123788)
chr7 (29-106)||(24250477-24250554)
chr7 (103-137)||(8123657-8123691)
chr7 (23-88)||(19511436-19511501)
chr7 (105-137)||(21882879-21882911)
chr7 (67-103)||(44601019-44601055)
[»] chr3 (11 HSPs)
chr3 (17-117)||(18271974-18272074)
chr3 (17-126)||(26442937-26443046)
chr3 (17-108)||(1632814-1632905)
chr3 (17-103)||(34905857-34905943)
chr3 (29-109)||(40840671-40840751)
chr3 (17-106)||(45852945-45853034)
chr3 (17-137)||(48897691-48897822)
chr3 (17-106)||(2671911-2672000)
chr3 (64-109)||(10593518-10593563)
chr3 (17-135)||(31192034-31192156)
chr3 (34-106)||(1714006-1714078)
[»] chr4 (12 HSPs)
chr4 (23-134)||(29065295-29065406)
chr4 (23-109)||(19482523-19482609)
chr4 (17-132)||(42504205-42504328)
chr4 (17-109)||(41545420-41545512)
chr4 (22-106)||(25817673-25817757)
chr4 (17-103)||(5288533-5288619)
chr4 (17-106)||(24060584-24060673)
chr4 (17-109)||(37762810-37762904)
chr4 (17-103)||(51304310-51304396)
chr4 (17-106)||(30220709-30220796)
chr4 (17-95)||(16528582-16528663)
chr4 (23-106)||(2765385-2765468)
[»] chr6 (10 HSPs)
chr6 (17-109)||(2130503-2130595)
chr6 (17-109)||(6784713-6784805)
chr6 (17-109)||(32871764-32871856)
chr6 (17-109)||(34713506-34713598)
chr6 (17-106)||(6519248-6519337)
chr6 (17-103)||(28867196-28867282)
chr6 (102-135)||(6784809-6784842)
chr6 (19-78)||(3855748-3855807)
chr6 (99-130)||(32871857-32871888)
chr6 (17-106)||(11301844-11301933)
[»] chr5 (12 HSPs)
chr5 (17-109)||(3040271-3040363)
chr5 (17-107)||(30735332-30735422)
chr5 (17-137)||(25493785-25493916)
chr5 (17-135)||(34280117-34280237)
chr5 (17-103)||(30700881-30700967)
chr5 (17-109)||(30071776-30071868)
chr5 (34-136)||(40519146-40519258)
chr5 (17-106)||(20359919-20360010)
chr5 (17-87)||(7547293-7547362)
chr5 (30-109)||(24402048-24402128)
chr5 (99-137)||(21259184-21259222)
chr5 (99-135)||(3040364-3040400)
[»] chr1 (17 HSPs)
chr1 (17-109)||(35413031-35413123)
chr1 (17-105)||(29657373-29657461)
chr1 (17-109)||(10061597-10061689)
chr1 (58-137)||(13085093-13085172)
chr1 (17-106)||(43537156-43537245)
chr1 (17-109)||(26469949-26470041)
chr1 (34-109)||(11470029-11470104)
chr1 (17-108)||(21540080-21540171)
chr1 (17-106)||(23906617-23906706)
chr1 (17-109)||(35149675-35149767)
chr1 (71-135)||(1062807-1062871)
chr1 (17-64)||(4684518-4684565)
chr1 (57-106)||(49313615-49313664)
chr1 (99-137)||(48852609-48852647)
chr1 (99-136)||(23906710-23906747)
chr1 (17-82)||(33077719-33077784)
chr1 (99-135)||(49313575-49313611)
[»] scaffold0018 (1 HSPs)
scaffold0018 (27-106)||(69946-70025)
[»] scaffold0122 (1 HSPs)
scaffold0122 (17-106)||(18642-18731)
[»] scaffold0194 (1 HSPs)
scaffold0194 (17-77)||(27120-27180)
[»] scaffold0247 (1 HSPs)
scaffold0247 (41-84)||(19220-19263)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 14131253 - 14131028
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaaaactctc 116  Q
    |||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  14131253 atttgctaacacatttccttaattacacaccattatctcgcttgatttccgccaaataacagatttaattggtccagacattttcttgataaaaactctc 14131154  T
Q  117 tagataaatagcaatgctcttgacaaaatcatagtga---tgcgggattttgcaaaaggtacagcttgtatcaaatccattataactttgaaaatgtaca 213  Q
    ||||||||||||||| ||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14131153 tagataaatagcaatcctcttgacaaaatcataatgatcttgcgggattttgcaaaaggtacagcttgtatcaaatccattataactctgaaaatgtaca 14131054  T
Q  214 tattacaaattgcaaataaatttggt 239  Q
    |||||||||| |||||||||||||||    
T  14131053 tattacaaatagcaaataaatttggt 14131028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 27007266 - 27007152
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaaaactctc 116  Q
    ||||| |||||| ||||||||| ||||||| ||||||||  |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  27007266 atttgttaacacttttccttaaatacacactattacctcccttgatttccgccaaataacaaatttatttggttgagacaatttcttgataaaaactctc 27007167  T
Q  117 tagataaatagcaat 131  Q
    || ||||||||||||    
T  27007166 taaataaatagcaat 27007152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 13716721 - 13716852
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacatt-----------ttcttga 105  Q
    |||||||||||||||| ||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||| ||           |||||||    
T  13716721 atttgctaacaccttttcttaattacacactattacctcctttgattttcgccaaatcacaaatttaattggttgagactttttcttgataaattcttga 13716820  T
Q  106 taaaaactctctagataaatagcaatgctctt 137  Q
    ||||||||||||||||||||||||||||||||    
T  13716821 taaaaactctctagataaatagcaatgctctt 13716852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 37714520 - 37714428
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||||||||||||||||||||| || |||||||||||||    
T  37714520 atttgctaacacctttccttaattacacaccattatctcctttgatttccatcaaataacaaatttaattggttgataccttttcttgataaa 37714428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 20143065 - 20142973
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    |||| |||||||||||||||||||||||| ||||||||   |||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  20143065 attttctaacacctttccttaattacacatcattaccttccttgatttccgccaaataataaatttaattggttgagactttttcttgataaa 20142973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 3167993 - 3167907
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttctt 103  Q
    ||||||||||||||||| ||||||||||| ||||||||  ||||||||||| ||||||| ||||||||||||||||||| |||||||    
T  3167993 atttgctaacacctttctttaattacacatcattaccttctttgatttccgacaaataataaatttaattggttgagaccttttctt 3167907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 32976031 - 32976122
Alignment:
Q  17 atttgctaacacctttccttaattacacaccatt--acctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    |||| ||||||||||| |||||||||| ||||||  ||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32976031 atttactaacaccttttcttaattacataccattttaccttctttgatttccgacaaataacaaatttaattggttgagacattttcttgat 32976122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 38320211 - 38320303
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    ||||| |||||| |||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |  |||||||||||||    
T  38320211 atttgataacacatttccttatttacacatcattacctcctttgatttccaccaaataacaaatttaattggttgaaaacttttcttgataaa 38320303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 35457497 - 35457411
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttctt 103  Q
    ||||| |||||| |||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| |||| || |||||||    
T  35457497 atttgttaacacatttccttaattacacaccattacctcctttgatttccgctaaataataaatttaattgattgaaaccttttctt 35457411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 19945747 - 19945866
Alignment:
Q  29 ctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacatt-----------ttcttgataaaaactctct 117  Q
    |||||||||||||||||||||||||||  || ||||||| |||||||||||||||||||   ||||||||           ||||| |||||||||||||    
T  19945747 ctttccttaattacacaccattacctcccttaatttccgtcaaataacaaatttaattgaccgagacatttttttaataaattcttaataaaaactctct 19945846  T
Q  118 agataaatagcaatgctctt 137  Q
    | ||||||||||||||||||    
T  19945847 aaataaatagcaatgctctt 19945866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 31645107 - 31645191
Alignment:
Q  17 atttgctaacacc-tttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacatttt 100  Q
    ||||||||||||| ||| |||||||||||| |||||| |   |||||||||||||||| | |||||||||||||| |||||||||    
T  31645107 atttgctaacacccttttcttaattacacatcattacgtttcttgatttccgccaaattaaaaatttaattggttaagacatttt 31645191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 24184047 - 24183976
Alignment:
Q  38 attacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    ||||||||||||||||||  |||| ||||| ||||||| |||||||||||| ||| || |||||||||||||    
T  24184047 attacacaccattacctctattgagttccggcaaataataaatttaattggctgaaaccttttcttgataaa 24183976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 4434397 - 4434305
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgt---ttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    |||||| ||||| ||| |||||||||||||||||||||| |   ||||||| || |||||||||||||||||||  || ||| ||||||||||    
T  4434397 atttgccaacacatttacttaattacacaccattacctcctcccttgattttcggcaaataacaaatttaattgactgggaccttttcttgat 4434305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 31845511 - 31845453
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataa 75  Q
    ||||||||||| ||| |||||||||||||||||||||||  |||||||||| |||||||    
T  31845511 atttgctaacatcttaccttaattacacaccattacctctcttgatttccgacaaataa 31845453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 37899545 - 37899645
Alignment:
Q  48 attacctcgtttgatttccgccaaataacaaatttaattggttgagacattttc-----------ttgataaaaactctctagataaatagcaatgctct 136  Q
    |||||||| |||||||| || ||||| |||||||||||||||||| || |||||           |||||||||||||||||||||||||||||||||||    
T  37899545 attacctcctttgattttcgacaaatcacaaatttaattggttgaaaccttttcttgataaatttttgataaaaactctctagataaatagcaatgctct 37899644  T
Q  137 t 137  Q
    |    
T  37899645 t 37899645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 27407519 - 27407430
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    ||||||||| || |||||||||||||||| ||||| ||   ||||||||||  ||||||||||||||||||| ||| |  ||||||||||    
T  27407519 atttgctaatacatttccttaattacacagcattatcttccttgatttccggtaaataacaaatttaattggctgatatcttttcttgat 27407430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 5881442 - 5881505
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaat 80  Q
    ||||||||| ||||||||||||||||||| |||||| |   ||||||||||  |||||||||||    
T  5881442 atttgctaatacctttccttaattacacatcattacattccttgatttccggtaaataacaaat 5881505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 32976126 - 32976165
Alignment:
Q  99 ttcttgataaaaactctctagataaatagcaatgctcttg 138  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  32976126 ttcttgataaaatctctctagataaatagcattgctcttg 32976165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 38320304 - 38320340
Alignment:
Q  99 ttcttgataaaaactctctagataaatagcaatgctc 135  Q
    |||||||||||||||||||||||||||| | ||||||    
T  38320304 ttcttgataaaaactctctagataaataacgatgctc 38320340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 26415649 - 26415530
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaaaactctc 116  Q
    ||||||||| ||||||||||||||||||| ||||| ||| ||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  26415649 atttgctaatacctttccttaattacacatcattatctcttttaatttccgtcaaataataaatttaattggttgagaccttttcttgataaaaactctc 26415550  T
Q  117 tagataaatagcaatgctct 136  Q
    ||||||||||||||||||||    
T  26415549 tagataaatagcaatgctct 26415530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 38585099 - 38585191
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    |||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||| ||||||||||||  |||| ||||||||||||||||    
T  38585099 atttgctaacacttttctttaattacacacaattacctcctttgatttccgccaaatgacaaatttaattaattgaaacattttcttgataaa 38585191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 29414480 - 29414390
Alignment:
Q  16 catttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    |||||| ||||||||||||||||||| ||||||||||||   ||||||| || |||||||||||||||||||| |||||||||||||||||    
T  29414480 catttgttaacacctttccttaattaaacaccattaccttccttgattttcggcaaataacaaatttaattggctgagacattttcttgat 29414390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 24068128 - 24068256
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacatt-----------ttcttga 105  Q
    |||| |||||| ||||||||||||||||||||| ||||| ||||||||  | |||||||||||||||||||| |||||| ||           |||||||    
T  24068128 atttcctaacatctttccttaattacacaccatcacctcctttgattt-tggcaaataacaaatttaattggctgagactttttctcgatcaattcttga 24068226  T
Q  106 taaaaactctctagataaatagcaatgctc 135  Q
    ||||| ||||||||||||||||||||||||    
T  24068227 taaaatctctctagataaatagcaatgctc 24068256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 5718458 - 5718528
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattg 87  Q
    |||||||||||| |||||||||||||||||||||||||   |||||||||| ||||||| |||||||||||    
T  5718458 atttgctaacacatttccttaattacacaccattaccttccttgatttccgacaaataataaatttaattg 5718528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 33543444 - 33543362
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacatttt 100  Q
    ||||| ||||||||||  |||||||||||| |||| |||  |||||||| |||||||||||||||| |||||||||||||||||    
T  33543444 atttgttaacacctttttttaattacacac-attatctcccttgatttcagccaaataacaaattttattggttgagacatttt 33543362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 5686301 - 5686378
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgaga 94  Q
    |||||||||||| |||| ||||||||| |  ||||||||  |||||||||| ||||||||||||||||||| ||||||    
T  5686301 atttgctaacacatttcattaattacatattattacctcccttgatttccggcaaataacaaatttaattgattgaga 5686378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 43063881 - 43063973
Alignment:
Q  35 ttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaaaactctctagataaatag 127  Q
    ||||||| ||| ||||||||  |||||||| |  ||||||| |||||||||||  |||||| |||| |||||||||| | |||||||||||||    
T  43063881 ttaattatacatcattaccttatttgattttcaacaaataataaatttaattgactgagacctttttttgataaaaattttctagataaatag 43063973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 25124467 - 25124400
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaa 84  Q
    ||||| ||| |||||| |||||||||||| ||||| |||  ||||||||||||||||||||| |||||    
T  25124467 atttgttaataccttttcttaattacacatcattatctctcttgatttccgccaaataacaactttaa 25124400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 29543676 - 29543715
Alignment:
Q  70 aaataacaaatttaattggttgagacattttcttgataaa 109  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  29543676 aaataacaaatttaattggttgagatattttcttgataaa 29543715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 35393744 - 35393710
Alignment:
Q  99 ttcttgataaaaactctctagataaatagcaatgc 133  Q
    |||||||||||||||||||||||||||||||||||    
T  35393744 ttcttgataaaaactctctagataaatagcaatgc 35393710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 36947331 - 36947368
Alignment:
Q  99 ttcttgataaaaactctctagataaatagcaatgctct 136  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  36947331 ttcttgataaaatctctctagataaataacaatgctct 36947368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 46413754 - 46413874
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgcca---aataacaaatttaattggttgagacattttcttgataaaaact 113  Q
    ||||| ||||||||||||||||||||||| |||||||||  |||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  46413754 atttgttaacacctttccttaattacacatcattacctcccttgatttccgccaccaaataacaaatttaattggttgagacattttcttgataaaaact 46413853  T
Q  114 ctctagataaatagcaatgct 134  Q
    || ||||||||||||||||||    
T  46413854 ctatagataaatagcaatgct 46413874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 21882780 - 21882866
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttctt 103  Q
    |||||||||||| ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||| |||||  |||||||    
T  21882780 atttgctaacacttttccttaattacacaccattacctcccttgatttccggcaaataacaaatttaattggctgagatcttttctt 21882866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 22631573 - 22631488
Alignment:
Q  21 gctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||| |||||  ||||||||||    
T  22631573 gctaacacctttccttaattacacactattatctcctttgatttccgacaaataacaaatttaattggctgagatcttttcttgat 22631488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 23611761 - 23611852
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    ||||| |||||||||| ||||||||||  ||||||||||  |||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  23611761 atttgttaacacctttacttaattacat-ccattacctctcttgatttccgtcaaataacaaatttaatttgttgagacattttcttgataaa 23611852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 46297710 - 46297618
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    |||||||||||| |||||||||||||||||||||| |||  ||||||| || ||||||||||||| || ||| ||||||||||||||||||||    
T  46297710 atttgctaacacatttccttaattacacaccattaactcccttgattttcgacaaataacaaattaaaatggctgagacattttcttgataaa 46297618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 1985103 - 1985023
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacat 97  Q
    |||||||||||| |||||||||||||| ||||||||||   |||||||||| |||||||||||||||||||| ||||||||    
T  1985103 atttgctaacacatttccttaattacataccattaccttccttgatttccggcaaataacaaatttaattggctgagacat 1985023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 20125687 - 20125598
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    ||||||||| ||||||| ||||||||||||||||| ||  ||| ||||| | ||| |||||||||||||||| ||| |||||||||||||    
T  20125687 atttgctaatacctttctttaattacacaccattatcttctttaatttctgacaagtaacaaatttaattggctgacacattttcttgat 20125598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 23730516 - 23730603
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    ||||| ||||||||||||||||||||||  |||||||||  |||||||||| |||||||| ||||||||| | ||| || ||||||||||    
T  23730516 atttgttaacacctttccttaattacac--cattacctctcttgatttccgacaaataacgaatttaatttgctgaaacgttttcttgat 23730603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 8123788 - 8123699
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    ||||||||||||||||| ||||||| |||  |||| |||  || ||||||  |||||||||||||||||||  |||||||||||||||||    
T  8123788 atttgctaacacctttctttaattatacattattatctccattaatttccaacaaataacaaatttaattgactgagacattttcttgat 8123699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 24250477 - 24250554
Alignment:
Q  29 ctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    |||| |||||||||| |||||||||||  |||||||||| ||||||||||||| |||||| | |||  ||||||||||    
T  24250477 cttttcttaattacaaaccattacctcccttgatttccgacaaataacaaattaaattggataagatcttttcttgat 24250554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 8123691 - 8123657
Alignment:
Q  103 tgataaaaactctctagataaatagcaatgctctt 137  Q
    |||||||| ||||||||||||||||||||||||||    
T  8123691 tgataaaatctctctagataaatagcaatgctctt 8123657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 19511501 - 19511436
Alignment:
Q  23 taacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattgg 88  Q
    |||||||||||||||||||| ||| |||| |||  |||||||||   |||||| ||||||||||||    
T  19511501 taacacctttccttaattactcactattatctccattgatttccaaaaaataataaatttaattgg 19511436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 21882879 - 21882911
Alignment:
Q  105 ataaaaactctctagataaatagcaatgctctt 137  Q
    |||||| ||||||||||||||||||||||||||    
T  21882879 ataaaatctctctagataaatagcaatgctctt 21882911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 44601055 - 44601019
Alignment:
Q  67 gccaaataacaaatttaattggttgagacattttctt 103  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  44601055 gccaaataacaaatttaattgattgaaacattttctt 44601019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 18271974 - 18272074
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaaaactctc 116  Q
    ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18271974 atttgctaacacctttctttaattacacaccattacctccattgatttccgccaaataacaaatttaattggttgagatattttcttgataaaaactctc 18272073  T
Q  117 t 117  Q
    |    
T  18272074 t 18272074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 26443046 - 26442937
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaaaactctc 116  Q
    ||||| ||||||||||  |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||     
T  26443046 atttggtaacaccttttgttaattacacaccattacctcccttgatttccgccaaataacaaatttaattggttgagaccttttcttgataaaaaatctt 26442947  T
Q  117 tagataaata 126  Q
    ||||||||||    
T  26442946 tagataaata 26442937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 1632905 - 1632814
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataa 108  Q
    ||||| |||||| |||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  1632905 atttgttaacacgtttctttaattacacaccattacctcctttgatttccgcaaaataacaaatttaattagttgagacattttcttgataa 1632814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 34905943 - 34905857
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttctt 103  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||||  | |||||||||||||||| ||| ||||||||||||||    
T  34905943 atttgctaacacctttccttaattatacatcattacctcctttgatttttgacaaataacaaatttaactggctgagacattttctt 34905857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 40840671 - 40840751
Alignment:
Q  29 ctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    ||||| || |||| ||| ||||||||| ||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||    
T  40840671 ctttctttgattatacatcattacctcctttgatttccgccaaataataaatttaattagttgaaacatttttttgataaa 40840751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 45852945 - 45853034
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    |||||||||||||||| |||||||||| | ||||| |||  |||||| |   ||||||| ||||||||||||||||||| ||||||||||    
T  45852945 atttgctaacaccttttcttaattacatatcattatctcccttgattgcaagcaaataataaatttaattggttgagactttttcttgat 45853034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 48897691 - 48897822
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacatt-----------ttcttga 105  Q
    ||||||||||| |||| ||||||||||||||||||  ||  ||||||| || |||||||||||||||| | | ||| |||||           |||||||    
T  48897691 atttgctaacatcttttcttaattacacaccattatttccattgattttcgacaaataacaaatttaacttgctgaaacatttttttgattaattcttga 48897790  T
Q  106 taaaaactctctagataaatagcaatgctctt 137  Q
    ||||| ||||||||||||||||||||||||||    
T  48897791 taaaatctctctagataaatagcaatgctctt 48897822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 2672000 - 2671911
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    ||||| ||||| ||||||||||||||||| ||||| ||| | |||||| |  | |||||||||||||||||| ||| || ||||||||||    
T  2672000 atttgttaacatctttccttaattacacatcattatctcctctgattttcagccaataacaaatttaattggctgacaccttttcttgat 2671911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 10593518 - 10593563
Alignment:
Q  64 tccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||    
T  10593518 tccgctaaataacaaatttaattggttgagacattttctggataaa 10593563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 31192156 - 31192034
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttct----tgataaaaac 112  Q
    ||||||||| | |||||||||||||||||| |||| |||  || |||| |   |||||||||||||||||| |||||| ||||| |     ||||||| |    
T  31192156 atttgctaatatctttccttaattacacactattatctctcttaattttcaataaataacaaatttaattgattgagatattttttaatcagataaaatc 31192057  T
Q  113 tctctagataaatagcaatgctc 135  Q
    |||||| ||||||||||||||||    
T  31192056 tctctatataaatagcaatgctc 31192034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 1714006 - 1714078
Alignment:
Q  34 cttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    |||||||| |||| |||| |||  || ||||||||||||||||||||||||||| |||| | |||||||||||    
T  1714006 cttaattatacacaattatctcccttaatttccgccaaataacaaatttaattgattgaaatattttcttgat 1714078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 29065295 - 29065406
Alignment:
Q  23 taacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaaaactctctagata 122  Q
    ||||||||||| |||||||||||||||||||||  |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||    
T  29065295 taacacctttctttaattacacaccattacctccattgatttccgtcaaataacaaatttaattgattgagactttttcttgataaaaactctttagata 29065394  T
Q  123 aatagcaatgct 134  Q
    |||| |||||||    
T  29065395 aataacaatgct 29065406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 19482609 - 19482523
Alignment:
Q  23 taacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    |||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  19482609 taacacctttccttaattacacaccattacttcccttgatttccgccaaataacaaatttaattggttgaaaaattttcttgataaa 19482523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 42504205 - 42504328
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttg--------ataa 108  Q
    ||||| ||||||||||||||||||||||| |||||||||  |||||||||| |||||||||||||||||||||||| |  ||||||||        ||||    
T  42504205 atttgttaacacctttccttaattacacatcattacctcccttgatttccggcaaataacaaatttaattggttgaaatcttttcttgatcaattcataa 42504304  T
Q  109 aaactctctagataaatagcaatg 132  Q
    ||||||||||||||||||||||||    
T  42504305 aaactctctagataaatagcaatg 42504328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 41545512 - 41545420
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    ||||||||||||||||| |||||||||||| |||||||  || |||||| ||||||||||||||||||||||||||| | |||||||||||||    
T  41545512 atttgctaacacctttcattaattacacacaattaccttcttcgatttctgccaaataacaaatttaattggttgaggccttttcttgataaa 41545420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 25817757 - 25817673
Alignment:
Q  22 ctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    ||||||| ||| ||||||||||||||||||||||  |||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  25817757 ctaacacattttcttaattacacaccattacctcacttgatttccgtcaaataacaaatttaattggctgagaccttttcttgat 25817673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 5288619 - 5288533
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttctt 103  Q
    |||||||||||| |||  ||||||||||||||||| |||  ||||||| || |||||||||||||||||||| ||||||||||||||    
T  5288619 atttgctaacacatttttttaattacacaccattatctcccttgatttacggcaaataacaaatttaattggctgagacattttctt 5288533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 24060673 - 24060584
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    |||||||||||| |||||||||||||||||||||| |||  ||||||||   | |||||||||||||||| | | |||||||||||||||    
T  24060673 atttgctaacacatttccttaattacacaccattatctcccttgatttctaaccaataacaaatttaattagcttagacattttcttgat 24060584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 37762904 - 37762810
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggt--tgagacattttcttgataaa 109  Q
    ||||| |||||| |||||||||||||||| |||||  || ||||| || || |||||||||||||||||||||  || | |||||||||||||||    
T  37762904 atttgttaacacttttccttaattacacatcattatttcctttgactttcgtcaaataacaaatttaattggttgtgtggcattttcttgataaa 37762810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 51304310 - 51304396
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttctt 103  Q
    |||||||||||  |||  |||||| ||| |||||| ||| ||||||||||| ||||||||||||||||||| ||| || ||||||||    
T  51304310 atttgctaacatatttttttaattgcacgccattatctcctttgatttccgtcaaataacaaatttaattgattgtgatattttctt 51304396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 30220796 - 30220709
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    |||||||||||| ||||||||||||||||||| || |||  |||||||||| | ||||||||| |||||||| ||| || ||||||||||    
T  30220796 atttgctaacacttttccttaattacacaccaata-ctcccttgatttccggccaataacaaaattaattgg-tgaaaccttttcttgat 30220709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 16528663 - 16528582
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacc---tcgtttgatttccgccaaataacaaatttaattggttgagac 95  Q
    ||||| |||||| |||| |||||||||||||||||     || ||||||||||| |||||||||||||||||||| ||||||    
T  16528663 atttgttaacacatttctttaattacacaccattaatatatcatttgatttccgacaaataacaaatttaattggctgagac 16528582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 2765385 - 2765468
Alignment:
Q  23 taacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    ||||||||||| ||||||||||| ||||| |||   ||||||  | | |||||||||||||||||| | |||| ||||||||||    
T  2765385 taacacctttcattaattacacatcattatctcccatgatttttggccaataacaaatttaattggcttagaccttttcttgat 2765468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 2130503 - 2130595
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  2130503 atttgctaacacctttccttaattacacacaatcacctcctttgatttccgccaaataacaaatttaattggttgagattttttcttgataaa 2130595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 6784713 - 6784805
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    |||||||||||||||| |||||||||||||||||| |||  |||||||||| |||||||||||||||||||| |||||  |||| ||||||||    
T  6784713 atttgctaacaccttttcttaattacacaccattatctcccttgatttccgacaaataacaaatttaattggctgagatcttttattgataaa 6784805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 32871764 - 32871856
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    |||| ||||||  ||||||||||||||||| ||||||||  |||||||||| |||||||||||||||||||||||| || |||||||||||||    
T  32871764 atttactaacatttttccttaattacacactattacctcccttgatttccgtcaaataacaaatttaattggttgaaaccttttcttgataaa 32871856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 34713598 - 34713506
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    ||||| |||||||||| ||||| ||||||||||||| ||  ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||    
T  34713598 atttgttaacaccttttcttaaatacacaccattacatcccttgattttcgccaaataacaaatttaattagttgagacaatttcttgataaa 34713506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 6519337 - 6519248
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    |||||||||| | ||| |||||||||||| |||||| || |||||||| || |||||||||||||||||||  |||||||||||||||||    
T  6519337 atttgctaactcattttcttaattacacatcattacatcctttgattttcggcaaataacaaatttaattgactgagacattttcttgat 6519248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 28867282 - 28867196
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttctt 103  Q
    ||||||||| || |||||||||||||| || |||||||| ||||||||||  ||||||||||||||||||| |||| || |||||||    
T  28867282 atttgctaaaacatttccttaattacatactattacctcctttgatttccaacaaataacaaatttaattgattgaaactttttctt 28867196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 6784809 - 6784842
Alignment:
Q  102 ttgataaaaactctctagataaatagcaatgctc 135  Q
    ||||||||||||||||||||||||||||||||||    
T  6784809 ttgataaaaactctctagataaatagcaatgctc 6784842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 3855748 - 3855807
Alignment:
Q  19 ttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaa 78  Q
    |||||||||||||||||||||||||||  ||||| ||  || ||||||| ||||||||||    
T  3855748 ttgctaacacctttccttaattacacattattacatcccttaatttccgtcaaataacaa 3855807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 130
Target Start/End: Original strand, 32871857 - 32871888
Alignment:
Q  99 ttcttgataaaaactctctagataaatagcaa 130  Q
    ||||||||||||||||||||||||||||||||    
T  32871857 ttcttgataaaaactctctagataaatagcaa 32871888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 11301933 - 11301844
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    |||| |||||| ||||||||||||| | || ||||||| | ||||||| ||  |||||||||||| |||||  |||||| ||||| ||||    
T  11301933 atttcctaacatctttccttaattatatactattaccttgcttgattttcgagaaataacaaattcaattgactgagaccttttcatgat 11301844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 3040271 - 3040363
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| | ||| |||||||||||||||| |||||||||||||||||||||    
T  3040271 atttgctaacacctttccttaattacacaccattacctcccttgattttcaccagataacaaatttaattgattgagacattttcttgataaa 3040363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 30735332 - 30735422
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgata 107  Q
    |||||||||||| ||| ||||||||| || |||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30735332 atttgctaacactttttcttaattacccagcattacctcccttgatttccgccaaataacaaatttaattgattgagacattttcttgata 30735422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 25493916 - 25493785
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttct-----------tga 105  Q
    ||||| ||| || |||||||||||||||||||||||||| ||||||||| | |||| ||||||||||||||| |||||||||||||           |||    
T  25493916 atttgttaatacatttccttaattacacaccattacctcctttgatttctgacaaagaacaaatttaattggctgagacattttcttgatcaattcttga 25493817  T
Q  106 taaaaactctctagataaatagcaatgctctt 137  Q
    ||||||||||||||||||||||||||||||||    
T  25493816 taaaaactctctagataaatagcaatgctctt 25493785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 34280117 - 34280237
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggtt--gagacattttcttgataaaaactc 114  Q
    ||||| ||||| ||||||||||||||| ||||||| ||   || ||||||||||||||||||||||||||| ||  ||||| || |||||||||||||||    
T  34280117 atttgttaacatctttccttaattacataccattatcttccttaatttccgccaaataacaaatttaattgattgagagactttgtcttgataaaaactc 34280216  T
Q  115 tctagataaatagcaatgctc 135  Q
    |||||||||||| ||| ||||    
T  34280217 tctagataaataacaacgctc 34280237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 30700881 - 30700967
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttctt 103  Q
    |||||||||||||||| |||||||||||| |||||||||  || |||| || ||||||||||||||||||| |||||||||||||||    
T  30700881 atttgctaacaccttttcttaattacacaacattacctcccttaattttcgtcaaataacaaatttaattgattgagacattttctt 30700967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 30071868 - 30071776
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    |||||||||| |||||||| |||||||||||| |||||    ||||||||  ||||||| ||||||||||||||||||| |||||||| ||||    
T  30071868 atttgctaactcctttcctcaattacacaccactaccttccatgatttccaacaaataataaatttaattggttgagaccttttcttgttaaa 30071776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 40519258 - 40519146
Alignment:
Q  34 cttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagac--att---------ttcttgataaaaactctctagata 122  Q
    |||||||||||| |||||||||  | |||||||  |||||||||||||||||||||||||||  |||         ||||||||||||||||||||||||    
T  40519258 cttaattacacatcattacctccct-gatttccatcaaataacaaatttaattggttgagacttattcttaataaattcttgataaaaactctctagata 40519160  T
Q  123 aatagcaatgctct 136  Q
    ||||||||||||||    
T  40519159 aatagcaatgctct 40519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 20360010 - 20359919
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaa--taacaaatttaattggttgagacattttcttgat 106  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||||||| |  |||  ||||| |||||||||   ||||||||||||||||    
T  20360010 atttgctaacacctttctttaattacacaccattatctcctttgatttcaggaaaatttaacagatttaattgaccgagacattttcttgat 20359919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 7547362 - 7547293
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattg 87  Q
    |||||||||||| |||||||||||||| | ||||| |||  |||||||||| |||||||||||||| ||||    
T  7547362 atttgctaacacatttccttaattacaaatcattatctc-cttgatttccgtcaaataacaaatttgattg 7547293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 24402128 - 24402048
Alignment:
Q  30 tttccttaattacacaccattacctcgtttg-atttccg-ccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    |||||||||||||||| |||| | || |||| ||||||| |||||||||||||||| ||||||||||  |||||||||||||    
T  24402128 tttccttaattacacatcattgc-tcctttgtatttccgaccaaataacaaatttatttggttgagatcttttcttgataaa 24402048  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 21259222 - 21259184
Alignment:
Q  99 ttcttgataaaaactctctagataaatagcaatgctctt 137  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  21259222 ttcttgataaaaactctctagataaatataaatgctctt 21259184  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 3040364 - 3040400
Alignment:
Q  99 ttcttgataaaaactctctagataaatagcaatgctc 135  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  3040364 ttcttgataaaaactctctaggtaaataacaatgctc 3040400  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 35413123 - 35413031
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    ||||| |||||||||||||||||||||||| ||||||||  |||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  35413123 atttgttaacacctttccttaattacacactattacctcccttgatttccgtcaaataacaaatttaattggttgagaccttttcttgataaa 35413031  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 29657461 - 29657373
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttga 105  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||||| || ||||||||||||||||||||||||||| |||||||||    
T  29657461 atttgctaacacctttccttaattacatatcattacctcctttgattttcggcaaataacaaatttaattggttgagaccttttcttga 29657373  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 10061689 - 10061597
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    |||||||||||| |||||||||||||||| |||||||||  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||    
T  10061689 atttgctaacacatttccttaattacacatcattacctcccttgatttctgtcaaataacaaatttaattggttgagacttttttttgataaa 10061597  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 13085093 - 13085172
Alignment:
Q  58 ttgatttccgccaaataacaaatttaattggttgagacattttcttgataaaaactctctagataaatagcaatgctctt 137  Q
    |||||||||| |||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  13085093 ttgatttccggcaaataacaaatttaattgactgagatattttcttgataaaaactctctagataaataacaatgctctt 13085172  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 43537156 - 43537245
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    ||||| |||||| |||| |||||||||||||||||||||  |||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  43537156 atttgttaacacatttctttaattacacaccattacctcccttgatttccggcaaataacaaatttaattggctgagaccttttcttgat 43537245  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 26470041 - 26469949
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    ||||||||||||||||||||||||||||||||||| ||  |||||||| |   |||||| |||||||||| ||||||||||||||||||||||    
T  26470041 atttgctaacacctttccttaattacacaccattatcttctttgattttcattaaataataaatttaatttgttgagacattttcttgataaa 26469949  T

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Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 11470104 - 11470029
Alignment:
Q  34 cttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    |||||||||||| |||||||||  ||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  11470104 cttaattacacatcattacctcccttgatttccgccaaataacaaatttaattggttaagatattttcttgataaa 11470029  T

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Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 21540171 - 21540080
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataa 108  Q
    ||||| ||||||||||| ||||||||||  ||||| |||  || |||||||||||||||||||||||||||| |||||||||||||||||||    
T  21540171 atttgttaacacctttctttaattacacttcattatctcccttaatttccgccaaataacaaatttaattggctgagacattttcttgataa 21540080  T

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Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 23906617 - 23906706
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    ||||||||||||||||| |||||||||||||||||||||  |||||||  | |||||||||||||||||||| ||| || ||||||||||    
T  23906617 atttgctaacacctttctttaattacacaccattacctctcttgatttgtggcaaataacaaatttaattggctgaaactttttcttgat 23906706  T

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Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 35149675 - 35149767
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgataaa 109  Q
    ||||||||||||||||||||||||| ||| ||||| |||  |||||||  | |||||||||||||||||||||| ||| ||||||||||||||    
T  35149675 atttgctaacacctttccttaattatacatcattatctcccttgatttatgtcaaataacaaatttaattggttaagatattttcttgataaa 35149767  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 1062871 - 1062807
Alignment:
Q  71 aataacaaatttaattggttgagacattttcttgataaaaactctctagataaatagcaatgctc 135  Q
    |||||||||||||||||| ||| |||||||||||||||||| | |||||||||||| ||| ||||    
T  1062871 aataacaaatttaattggctgaaacattttcttgataaaaattttctagataaataacaacgctc 1062807  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 4684565 - 4684518
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgattt 64  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  4684565 atttgctaacacctttccttaattacacaccattatctcctttgattt 4684518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 49313664 - 49313615
Alignment:
Q  57 tttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    ||||||||||| | ||||||||||||||||  ||||||||||||||||||    
T  49313664 tttgatttccgactaataacaaatttaattaattgagacattttcttgat 49313615  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 48852647 - 48852609
Alignment:
Q  99 ttcttgataaaaactctctagataaatagcaatgctctt 137  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  48852647 ttcttaataaaaactctctagataaataacaatgctctt 48852609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 23906710 - 23906747
Alignment:
Q  99 ttcttgataaaaactctctagataaatagcaatgctct 136  Q
    |||||||||||| || ||||||||||||||||||||||    
T  23906710 ttcttgataaaacctttctagataaatagcaatgctct 23906747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 33077784 - 33077719
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaattt 82  Q
    |||||||||||| |||  ||||||||||| |||||||||  ||||||| || |||||| |||||||    
T  33077784 atttgctaacacatttatttaattacacatcattacctctcttgattttcggcaaatatcaaattt 33077719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 49313611 - 49313575
Alignment:
Q  99 ttcttgataaaaactctctagataaatagcaatgctc 135  Q
    ||||||||||||||||| | |||||||||||||||||    
T  49313611 ttcttgataaaaactctatggataaatagcaatgctc 49313575  T

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Target: scaffold0018 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 69946 - 70025
Alignment:
Q  27 acctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    |||||||||||||||||| |||||| |||  |||||||||| | |||||||||||||||||| ||| || ||||||||||    
T  69946 acctttccttaattacaccccattatctcccttgatttccggccaataacaaatttaattggctgaaaccttttcttgat 70025  T

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Target: scaffold0122 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 18731 - 18642
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataacaaatttaattggttgagacattttcttgat 106  Q
    |||||||||||| ||||||||||||| |||||||| |||  || |||| || |||||||||||||||||||  | |||| ||||||||||    
T  18731 atttgctaacacatttccttaattactcaccattatctcccttaattttcgacaaataacaaatttaattgactaagactttttcttgat 18642  T

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Target: scaffold0194 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 27120 - 27180
Alignment:
Q  17 atttgctaacacctttccttaattacacaccattacctcgtttgatttccgccaaataaca 77  Q
    ||||| |||||||||||||||||||||| | |||| |||  ||||||||||||||||||||    
T  27120 atttgttaacacctttccttaattacactctattatctcccttgatttccgccaaataaca 27180  T

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Target: scaffold0247 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 19263 - 19220
Alignment:
Q  41 acacaccattacctcgtttgatttccgccaaataacaaatttaa 84  Q
    |||||| |||||||| ||||||||||| ||||||||||||||||    
T  19263 acacactattacctcctttgatttccgtcaaataacaaatttaa 19220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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