View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_38 (Length: 236)
Name: NF8316_low_38
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 13652707 - 13652906
Alignment:
| Q |
22 |
cgatgtagagatcttccacgtttcggtacatcaaacaaaatggaccataacgttttagacaaagttttacaactaacccaagcatcacttaaaggcaatg |
121 |
Q |
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| T |
13652707 |
cgatgtagagatcttccacgtttcggtacatcaaacaaaatggaccatatcattttagacaaagttttacaactaacccaagcatcacttaaaggcaatg |
13652806 |
T |
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| Q |
122 |
cagtaatactcaacacatttgaagatctagagtccccaattctctcccaaattcgtctccacttccccaaactctacactattggcccacttcaccacca |
221 |
Q |
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| T |
13652807 |
cagtaatactcaacacatttgaagatttagagtccccaattctctcccaaattcgtctccacttccccaaactctacactattggcccacttcaccacca |
13652906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 13658254 - 13658370
Alignment:
| Q |
105 |
atcacttaaaggcaatgcagtaatactcaacacatttgaagatctagagtccccaattctctcccaaattcgtctccacttccccaaactctacactatt |
204 |
Q |
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| T |
13658254 |
atcacttaaaggcaatgcactaatactcaacacgttcgagaatctagaatccccagctctctctcaaattcgtcttcatgcccctaaactctacaccatt |
13658353 |
T |
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| Q |
205 |
ggcccacttcaccacca |
221 |
Q |
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| T |
13658354 |
ggccctcttcaccacca |
13658370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 13647726 - 13647841
Alignment:
| Q |
105 |
atcacttaaaggcaatgcagtaatactcaacacatttgaagatctagagtccccaattctctcccaaattcgtctccacttccccaaactctacactatt |
204 |
Q |
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||||||||||| |||||| | ||||||||||||||||| |||||||| || || | ||||||||||||||| | |||||||| ||||||||||| || |
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| T |
13647726 |
atcacttaaagcaaatgcattcatactcaacacatttgaggatctagaagcctcagtcctctcccaaattcgtattcacttccctaaactctacaccata |
13647825 |
T |
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| Q |
205 |
ggcccacttcaccacc |
220 |
Q |
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| T |
13647826 |
ggccctcttcaccacc |
13647841 |
T |
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