View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_39 (Length: 230)
Name: NF8316_low_39
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_39 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 16192 - 15994
Alignment:
| Q |
17 |
atactaggtttgtagtttcttgatacctggtcatagagttttagaaagtcgtcaagtgtggatacagcattagattggttgtagaactggtagttaaccc |
116 |
Q |
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| T |
16192 |
atactaggtttgtagtttcttgatacctggtcatagagttttagaaagtcgtcaagtgtggatacagctttagattggttgtagaactggtagttaaccc |
16093 |
T |
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| Q |
117 |
aatttatattggcctcattttgccaaaacaagttgcggtagtggatttcattggtctcggatggagcaatggacacgatcttgatgcgtagataattat |
215 |
Q |
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| T |
16092 |
aatttatattggcctcattttgccaaaacaagttgcggtagtggatttcattggtctcggatggagcaatggacacgatcttgatgcgtagataattat |
15994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 26360 - 26162
Alignment:
| Q |
17 |
atactaggtttgtagtttcttgatacctggtcatagagttttagaaagtcgtcaagtgtggatacagcattagattggttgtagaactggtagttaaccc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26360 |
atactaggtttgtagtttcttgatacctggtcatagagttttagaaagtcgtcaagtgtggatacagctttagattggttgtagaactggtagttaaccc |
26261 |
T |
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| Q |
117 |
aatttatattggcctcattttgccaaaacaagttgcggtagtggatttcattggtctcggatggagcaatggacacgatcttgatgcgtagataattat |
215 |
Q |
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| T |
26260 |
aatttatattggcctcattttgccaaaacaagttgcggtagtggatttcattggtctcggatggagcaatggacacgatcttgatgcgtagataattat |
26162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 36526 - 36328
Alignment:
| Q |
17 |
atactaggtttgtagtttcttgatacctggtcatagagttttagaaagtcgtcaagtgtggatacagcattagattggttgtagaactggtagttaaccc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36526 |
atactaggtttgtagtttcttgatacctggtcatagagttttagaaagtcgtcaagtgtggatacagctttagattggttgtagaactggtagttaaccc |
36427 |
T |
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| Q |
117 |
aatttatattggcctcattttgccaaaacaagttgcggtagtggatttcattggtctcggatggagcaatggacacgatcttgatgcgtagataattat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36426 |
aatttatattggcctcattttgccaaaacaagttgcggtagtggatttcattggtctcggatggagcaatggacacgatcttgatgcgtagataattat |
36328 |
T |
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