View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_4 (Length: 544)
Name: NF8316_low_4
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 95 - 523
Target Start/End: Original strand, 14212536 - 14212957
Alignment:
| Q |
95 |
cttactgtattgcaagttttcaatctttgttcatgttgaactgaagtagaagatacacagctggtattggatacatccctgtccatatcagtaagtcact |
194 |
Q |
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| T |
14212536 |
cttactgtattgcaagttttcaatctttgttcatgttgaactgaagtagaagatacacagctggtattggatacatccctgtccatatcagtaagtcact |
14212635 |
T |
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| Q |
195 |
cttagaagataaagtactaatatnnnnnnnnnnnnnnnnnnnnnnttcaatgttctagcttaaagaaagcatatcttatgtatttcttgccaataatatt |
294 |
Q |
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| T |
14212636 |
cttagaagataaagtactaatataaaaaaaataaaaa--------ttcaatgttctagcttaaagaaagcatatcttatgtatttcttgccaataatatt |
14212727 |
T |
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| Q |
295 |
atctcttcttatcaatattttatcatatcattgagctaacatttca-atcatgtttagtccctactttattcctcaaactattgaacttcaaaacacaga |
393 |
Q |
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| T |
14212728 |
atctcttcttatcaatattttatcatatcattgagctaacatttcatatcatgtttagtccctactttattcctcaaactattgaacttcaaaacacaga |
14212827 |
T |
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| Q |
394 |
aagttaatttctctcattgattaatcttacatataatttgctgaattattgctgcaataactgctccaccatggaatctctccataaagcatgacctgat |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14212828 |
aagttaatttctctcattgattaatcttacatataatttgctgaattattgctgcaataactgctccaccatggaatctctccataaagcatgacctgat |
14212927 |
T |
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| Q |
494 |
aatacaccaaacactccttatatctccttg |
523 |
Q |
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| T |
14212928 |
aatacaccaaacactccttatatctccttg |
14212957 |
T |
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