View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_45 (Length: 211)
Name: NF8316_low_45
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 17169523 - 17169323
Alignment:
| Q |
1 |
atcttgaaacttcttggtcaagaaaaagagatagccgatcttgccggaaaatatgctattctactaattccctacatgttttccttcgccgtcaatttac |
100 |
Q |
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| T |
17169523 |
atcttaaaacttcttggtcaagaaaaagagatagccgatcttgccggaaaatatgctattctactaattccctacatgttttccttcgccgtcaatttac |
17169424 |
T |
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| Q |
101 |
ccctcgtgaagtttcttcaagcacaaagcaaagttaatgttattatgtacatagcaatggttacattactcatccaaaatggtctactttacatcttcat |
200 |
Q |
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| T |
17169423 |
ccctcgtgaagtttcttcaagcacaaagcaaagttaatgttattatgtacatagcaatggttacattactcatccaaaatggtctactttacatcttcat |
17169324 |
T |
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| Q |
201 |
c |
201 |
Q |
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| T |
17169323 |
c |
17169323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 17137670 - 17137471
Alignment:
| Q |
1 |
atcttgaaacttcttggtcaagaaaaagagatagccgatcttgccggaaaatatgctattctactaattccctacatgttttccttcgccgtcaatttac |
100 |
Q |
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| T |
17137670 |
atcttaaaatttcttggccaagaacaagaaatagctgatctagctggcaaatatgcaattcaaataattccttgcatgttttcctttgctatcaatttac |
17137571 |
T |
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| Q |
101 |
ccctcgtgaagtttcttcaagcacaaagcaaagttaatgttattatgtacatagcaatggttacattactcatccaaaatggtctactttacatcttcat |
200 |
Q |
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| T |
17137570 |
ccatcaagaaatttcttcaagcacaatgcaaagttaatgttattatgtgcatatcactattgtttttactcatacaaaatggtctactttacatcttcat |
17137471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 17150971 - 17150772
Alignment:
| Q |
1 |
atcttgaaacttcttggtcaagaaaaagagatagccgatcttgccggaaaatatgctattctactaattccctacatgttttccttcgccgtcaatttac |
100 |
Q |
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||||| ||| ||||||| |||||| |||| ||||| || || || || |||||||||||||| ||||||| |||||||||||| || || |||||| |
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| T |
17150971 |
atcttaaaatttcttggccaagaacaagaaatagctgacctagctggcaaatatgctattcttataattccatacatgttttccagtgctatccatttac |
17150872 |
T |
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| Q |
101 |
ccctcgtgaagtttcttcaagcacaaagcaaagttaatgttattatgtacatagcaatggttacattactcatccaaaatggtctactttacatcttcat |
200 |
Q |
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|| || ||| ||||||||||||||||| ||||||| |||||||||||||||||||| || | ||| || || ||||||||||||||||| |||||||| |
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| T |
17150871 |
ccatccagaaatttcttcaagcacaaagtgaagttaaagttattatgtacatagcaattgtgatattgctaatacaaaatggtctactttatatcttcat |
17150772 |
T |
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