View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_5 (Length: 487)
Name: NF8316_low_5
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 45682571 - 45682317
Alignment:
| Q |
21 |
atcttatatttaaagcttgaaaattcatatgccaacggatcaataggaccaaatgagttgaaaaaggataaaagactaaaccattatctgaaataaagtt |
120 |
Q |
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| T |
45682571 |
atcttatatttaaagcttgaaaattcatatgccaacggatcaataggaccaaatgagttgaaaaaggataaaagactaaaccattatctgaaataaagtt |
45682472 |
T |
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| Q |
121 |
aaaggtttgcgaaaagcagagtggtagtattacttcattttggtggaaggaagagctcttcaaagtacaaacaccaaatgtatgcaaagctagttccaag |
220 |
Q |
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| T |
45682471 |
aaaggtttgcgaaaagcagagtggtagtattacttcattttggtggaaggaagagctcttcaaagtacaaacaccaaatgtatgcaaagctagttccaag |
45682372 |
T |
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| Q |
221 |
tcacactgtcaactgggaaaaacataaaagttcacattgtaagtccttgagcttc |
275 |
Q |
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| T |
45682371 |
tcacactgtcaactgggaaaaacataaaagttcacattgtaagtccttgagcttc |
45682317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 338 - 474
Target Start/End: Complemental strand, 45682254 - 45682118
Alignment:
| Q |
338 |
tccatgcagaaattaacttagaatgacaaagcaattacaaatatgaatgtgaacggaaaattcaatgaagcgtgaaagggaatttcacaagataaccatt |
437 |
Q |
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| T |
45682254 |
tccatgcagaaattaacttagaatgacaaagcaattacaaatatgaatgtgaacggaaaattcaatgaagcgtgaaagggaatttcacaagataaccatt |
45682155 |
T |
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| Q |
438 |
ccaaaaagaaatggccagcactatcaactagtaacat |
474 |
Q |
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| T |
45682154 |
ccaaaaagaaatggccagcactatcaactagtaacat |
45682118 |
T |
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