View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8316_low_8 (Length: 420)
Name: NF8316_low_8
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8316_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 210 - 401
Target Start/End: Original strand, 37155899 - 37156082
Alignment:
| Q |
210 |
agcagataattatagttttacgtacttcccatgcaatgtcaccaacatgtagtgtttgattctcacgtatgaaattgcatgtggcttatgcttaacaact |
309 |
Q |
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| T |
37155899 |
agcagataattatagttttacgtacttcccatgcaatgtcaccaacatgtagtgtttgattctcacgtatgaaattgcatgtggcttatgctta------ |
37155992 |
T |
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| Q |
310 |
atgcatttgtcaaattagatgcggaaatgacgaggaaagaatagagtatggaagatctatttttagatccggcagaacattaatatatagcc |
401 |
Q |
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| T |
37155993 |
--tcatttgtcaaattagatgcggaaatgacgaggaaaaaatagagtatggaagatctatttttagatccggcagaacattaatatatagcc |
37156082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 37155690 - 37155840
Alignment:
| Q |
1 |
tgcgaagataaggatcaacggagagaaggagagtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagttt |
100 |
Q |
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| T |
37155690 |
tgcgaagataaggatcaacggagagaaggagagtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagttt |
37155789 |
T |
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| Q |
101 |
aagatgatctgaggtcggaacaccttcaggacaatattcagctaagtacca |
151 |
Q |
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| T |
37155790 |
aagatgatctgaggtcggaacaccttcaggacaatattcagctaagtacca |
37155840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 37161293 - 37161441
Alignment:
| Q |
3 |
cgaagataaggatcaacggagagaaggagagtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagtttaa |
102 |
Q |
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| T |
37161293 |
cgaagataagggtcaacggaaagaaggagagtttcaactgctagatgattatcagggattgaatcatcggcaagagaaagagacacagtacggagtttaa |
37161392 |
T |
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| Q |
103 |
gatgatctgaggtcggaacaccttcaggacaatattcagctaagtacca |
151 |
Q |
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| T |
37161393 |
gatgatctgaggttggaacaccttcagtggaatatccagctaagtacca |
37161441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 2 - 151
Target Start/End: Original strand, 37150565 - 37150714
Alignment:
| Q |
2 |
gcgaagataaggatcaacggagagaaggagagtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagttta |
101 |
Q |
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| T |
37150565 |
gcgaagatatggatcaacagagagaaggagagtttcgacgattagatggtcatcagggattgattcatgggcaagagaaagagaaacagtgcggagttta |
37150664 |
T |
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| Q |
102 |
agatgatctgaggtcggaacaccttcaggacaatattcagctaagtacca |
151 |
Q |
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| T |
37150665 |
agatgatccgacgttggaacaccctcaggagagtatgcagctacgtacca |
37150714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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