View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8316_low_9 (Length: 389)

Name: NF8316_low_9
Description: NF8316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8316_low_9
NF8316_low_9
[»] chr4 (8 HSPs)
chr4 (28-253)||(30765291-30765516)
chr4 (249-369)||(30746370-30746490)
chr4 (44-104)||(56459730-56459790)
chr4 (44-107)||(52206428-52206491)
chr4 (44-82)||(56459004-56459042)
chr4 (42-87)||(31907684-31907729)
chr4 (44-89)||(44348856-44348901)
chr4 (44-104)||(53522860-53522921)
[»] chr1 (3 HSPs)
chr1 (44-104)||(19402353-19402413)
chr1 (42-89)||(26779720-26779767)
chr1 (44-82)||(19403101-19403139)
[»] chr8 (4 HSPs)
chr8 (44-107)||(29703463-29703526)
chr8 (44-113)||(5664245-5664315)
chr8 (47-98)||(8742048-8742099)
chr8 (43-96)||(42104427-42104480)
[»] chr7 (5 HSPs)
chr7 (296-355)||(31635103-31635162)
chr7 (28-107)||(23365309-23365388)
chr7 (121-173)||(3044344-3044395)
chr7 (43-88)||(7562044-7562089)
chr7 (43-91)||(3233395-3233443)
[»] chr5 (6 HSPs)
chr5 (44-107)||(34064854-34064917)
chr5 (44-113)||(2707443-2707511)
chr5 (43-107)||(14395343-14395407)
chr5 (44-108)||(13208700-13208765)
chr5 (44-82)||(34064128-34064166)
chr5 (49-82)||(23206296-23206329)
[»] chr6 (1 HSPs)
chr6 (90-150)||(26345401-26345461)
[»] chr3 (6 HSPs)
chr3 (44-108)||(42153169-42153234)
chr3 (32-121)||(54515773-54515862)
chr3 (126-170)||(23707013-23707056)
chr3 (126-170)||(23725469-23725512)
chr3 (126-170)||(23743925-23743968)
chr3 (77-113)||(29535553-29535589)
[»] chr2 (1 HSPs)
chr2 (51-91)||(3130192-3130232)
[»] scaffold0728 (1 HSPs)
scaffold0728 (44-82)||(114-152)
[»] scaffold0091 (1 HSPs)
scaffold0091 (44-89)||(2786-2831)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 30765516 - 30765291
Alignment:
Q  28 agtgagaatagatcttttatgtgagaatggtgagaatacttatcaacctttagatcaaaaataagtggtccagattaaaagtctcattttaaacctctcc 127  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  30765516 agtgagaatagatcttttatgtaagaatggtgagaatacttatcaacctttagatcaaaaacaagtggtccagattaaaagcctcattttaaacctctcc 30765417  T
Q  128 ttattctatcaattctcattaacacgtattcatcttctccaacccattcgtacgctttcaatcaacccaatcaattacagattattcaacataatcgtca 227  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  30765416 ttattctatcaattctcattaacacttattcatcttctccaacccattcgtacgctttcaatcaacccaatcagttacagattattcaacacaatcgtca 30765317  T
Q  228 aagaagaacttttcagagatcactta 253  Q
    |||||||| |||||||||||||||||    
T  30765316 aagaagaatttttcagagatcactta 30765291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 249 - 369
Target Start/End: Complemental strand, 30746490 - 30746370
Alignment:
Q  249 acttaccatgaaaatgagttctttcttgtttgacgtttcagattcacacaatttctcctcttgaccattttctaaataattttcaccaaactattacgtt 348  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30746490 acttaccataaaaatgagttctttcttgtttgacgtttcagattcacacaatttctcctcttgaccattttctaaataattttcaccaaactattacgtt 30746391  T
Q  349 ttcacatatatgtataatctg 369  Q
    |||||||||  ||||||||||    
T  30746390 ttcacatatcagtataatctg 30746370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 56459790 - 56459730
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagatcaaaaataagtggtccagatta 104  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  56459790 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta 56459730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 52206428 - 52206491
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagatcaaaaataagtggtccagattaaaa 107  Q
    |||| |||||||||||||||||||| |||||| || |||||||||||| |||| ||||||||||    
T  52206428 ttatatgagaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaa 52206491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 56459004 - 56459042
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagat 82  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  56459004 ttatatgagaatggtgagaacacttatcaacctttagat 56459042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 31907729 - 31907684
Alignment:
Q  42 ttttatgtgagaatggtgagaatacttatcaacctttagatcaaaa 87  Q
    |||||||||||||||||||||||  ||||||||| |||||| ||||    
T  31907729 ttttatgtgagaatggtgagaatgattatcaacccttagattaaaa 31907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 44348901 - 44348856
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagatcaaaaat 89  Q
    |||| |||||||||||| ||||||| |||||| |||||||||||||    
T  44348901 ttatatgagaatggtgaaaatacttctcaacccttagatcaaaaat 44348856  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 53522860 - 53522921
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacc-tttagatcaaaaataagtggtccagatta 104  Q
    |||| ||||||||||||||| ||||||||||| ||||| ||| |||||| |||| |||||||    
T  53522860 ttatatgagaatggtgagaacacttatcaaccttttaggtcagaaataaatggttcagatta 53522921  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 19402353 - 19402413
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagatcaaaaataagtggtccagatta 104  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  19402353 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta 19402413  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 26779767 - 26779720
Alignment:
Q  42 ttttatgtgagaatggtgagaatacttatcaacctttagatcaaaaat 89  Q
    |||||||||||||||||||||||  |||| |||| |||||||||||||    
T  26779767 ttttatgtgagaatggtgagaatgattatgaaccattagatcaaaaat 26779720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 19403139 - 19403101
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagat 82  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  19403139 ttatatgagaatggtgagaacacttatcaacctttagat 19403101  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 29703526 - 29703463
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagatcaaaaataagtggtccagattaaaa 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| | ||||| | |||||||    
T  29703526 ttatgtgagaatggtgagaacacttatcaacctttagatcaaaaattaatggtctaaattaaaa 29703463  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 5664315 - 5664245
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagatcaaaaataagtggtccaga-ttaaaagtctca 113  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||| |||| | || ||||||||||||    
T  5664315 ttatatgagaatggtgagaacacttatcaacctttagatgaaaaataaatggttcggatttaaaagtctca 5664245  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 8742048 - 8742099
Alignment:
Q  47 tgtgagaatggtgagaatacttatcaacctttagatcaaaaataagtggtcc 98  Q
    |||||||||||||||||| |||||||||  | ||||||||||||| ||||||    
T  8742048 tgtgagaatggtgagaatgcttatcaacaataagatcaaaaataaatggtcc 8742099  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 42104427 - 42104480
Alignment:
Q  43 tttatgtgagaatggtgagaatacttatcaacctttagatcaaaaataagtggt 96  Q
    ||||| |||||||| |||||||  ||||||||| ||||||||||||||| ||||    
T  42104427 tttatatgagaatgatgagaatgattatcaaccattagatcaaaaataaatggt 42104480  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 296 - 355
Target Start/End: Complemental strand, 31635162 - 31635103
Alignment:
Q  296 acaatttctcctcttgaccattttctaaataattttcaccaaactattacgttttcacat 355  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||||| ||||||    
T  31635162 acaatttctcctcttgaccatttcctacatgattttcaccaaactattacgttgtcacat 31635103  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 23365388 - 23365309
Alignment:
Q  28 agtgagaatagatcttttatgtgagaatggtgagaatacttatcaacctttagatcaaaaataagtggtccagattaaaa 107  Q
    |||||||||||||   |||||||||||| ||||||| ||||| |||||||||||| |||||| | ||  |||||||||||    
T  23365388 agtgagaatagataacttatgtgagaattgtgagaacacttaccaacctttagataaaaaatgaatgaaccagattaaaa 23365309  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 3044395 - 3044344
Alignment:
Q  121 cctctccttattctatcaattctcattaacacgtattcatcttctccaaccca 173  Q
    |||| ||||||||||||||||||||||||| | | ||||||||||||||||||    
T  3044395 cctccccttattctatcaattctcattaac-cttgttcatcttctccaaccca 3044344  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 7562089 - 7562044
Alignment:
Q  43 tttatgtgagaatggtgagaatacttatcaacctttagatcaaaaa 88  Q
    ||||| |||||||| |||||||| |||| |||||||||||||||||    
T  7562089 tttatatgagaatgatgagaataattatgaacctttagatcaaaaa 7562044  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 3233443 - 3233395
Alignment:
Q  43 tttatgtgagaatggtgagaatacttatcaacctttagatcaaaaataa 91  Q
    ||||| |||||||||||||||||||| | |||| ||||||| |||||||    
T  3233443 tttatatgagaatggtgagaatacttcttaaccattagatctaaaataa 3233395  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 34064917 - 34064854
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagatcaaaaataagtggtccagattaaaa 107  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||    
T  34064917 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtctagattaaaa 34064854  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 2707443 - 2707511
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagatcaaaaataagtggtccagattaaaagtctca 113  Q
    |||| |||||||||||||||  ||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  2707443 ttatatgagaatggtgagaac-cttatcaacctttagataaaaaataaatggtccagattaaaaggctca 2707511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 14395407 - 14395343
Alignment:
Q  43 tttatgtgagaatggtgagaatacttatcaacctttagatcaaaaataagtggtccagattaaaa 107  Q
    ||||||||||||||||||||| |||||||||||||| ||| |||||| | ||| |||||||||||    
T  14395407 tttatgtgagaatggtgagaacacttatcaacctttggataaaaaatgaatggaccagattaaaa 14395343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 13208700 - 13208765
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagat-caaaaataagtggtccagattaaaag 108  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||| | ||| ||||||||||||    
T  13208700 ttatgtgagaatggtgagaacacttatcaacctttagataaaaaaatgaatggaccagattaaaag 13208765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 34064128 - 34064166
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagat 82  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  34064128 ttatatgagaatggtgagaacacttatcaacctttagat 34064166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 23206296 - 23206329
Alignment:
Q  49 tgagaatggtgagaatacttatcaacctttagat 82  Q
    ||||||||||||||| ||||||||||||||||||    
T  23206296 tgagaatggtgagaacacttatcaacctttagat 23206329  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 26345401 - 26345461
Alignment:
Q  90 aagtggtccagattaaaagtctcattttaaacctctccttattctatcaattctcattaac 150  Q
    |||||||  |||||||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  26345401 aagtggtttagattaaaagcctcattttaaacatcttcttattctatcaattctcattaac 26345461  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 42153169 - 42153234
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacc-tttagatcaaaaataagtggtccagattaaaag 108  Q
    |||||||||||||||||||| |||||||| || ||||||| |||||| | ||| ||||||||||||    
T  42153169 ttatgtgagaatggtgagaacacttatcagccttttagataaaaaatgaatggaccagattaaaag 42153234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 54515773 - 54515862
Alignment:
Q  32 agaatagatcttttatgtgagaatggtgagaatacttatcaacctttagatcaaaaataagtggtccagattaaaagtctcattttaaac 121  Q
    ||||||| | ||| || |||||||| ||||||||||| | ||||||||||||||| |||| || | ||||||||||   |||||||||||    
T  54515773 agaatagctatttcatatgagaatgatgagaatacttgtgaacctttagatcaaatataaatgattcagattaaaaacatcattttaaac 54515862  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 23707013 - 23707056
Alignment:
Q  126 ccttattctatcaattctcattaacacgtattcatcttctccaac 170  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||    
T  23707013 ccttattctatcaattctcatgaacac-cattcatcttctccaac 23707056  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 23725469 - 23725512
Alignment:
Q  126 ccttattctatcaattctcattaacacgtattcatcttctccaac 170  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||    
T  23725469 ccttattctatcaattctcatgaacac-cattcatcttctccaac 23725512  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 23743925 - 23743968
Alignment:
Q  126 ccttattctatcaattctcattaacacgtattcatcttctccaac 170  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||    
T  23743925 ccttattctatcaattctcatgaacac-cattcatcttctccaac 23743968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 29535553 - 29535589
Alignment:
Q  77 ttagatcaaaaataagtggtccagattaaaagtctca 113  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  29535553 ttagatcaaaaataaatggtccagattaaaaggctca 29535589  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 3130232 - 3130192
Alignment:
Q  51 agaatggtgagaatacttatcaacctttagatcaaaaataa 91  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  3130232 agaatggtgagaatacttctcaacccttagatcaaaaataa 3130192  T

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Target: scaffold0728 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0728
Description:

Target: scaffold0728; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 152 - 114
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagat 82  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  152 ttatatgagaatggtgagaacacttatcaacctttagat 114  T

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Target: scaffold0091 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 2786 - 2831
Alignment:
Q  44 ttatgtgagaatggtgagaatacttatcaacctttagatcaaaaat 89  Q
    |||||||||||||||||||||  |||| |||| |||||||||||||    
T  2786 ttatgtgagaatggtgagaatgattatgaaccattagatcaaaaat 2831  T

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