View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8317_high_5 (Length: 254)
Name: NF8317_high_5
Description: NF8317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8317_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 34259867 - 34260115
Alignment:
| Q |
1 |
ctgcatgttgagaaatgttatcttggttatttgaaaggcacgcccatgtctcggggttcaataactggcactcgtcaataatgaaaaccttaaaacgaga |
100 |
Q |
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| T |
34259867 |
ctgcatgttgagaaatgttatcttggttatttgaaaggcacgcccatgtctcggggttcaataactggcactcgtcaataatgaaaaccttaaaacgaga |
34259966 |
T |
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| Q |
101 |
ggaaacaggaggtgtacacgcattcttaacaagggatttaacctggtctgtgtgattgattctcacagaatccacttccttaacatctttacttcttcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34259967 |
ggaaacaggaggtgtacacgcattcttaacaagggatttaacctggtctgtgtgattgattctcacagaatccacttccttaacatctttacttcttcca |
34260066 |
T |
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| Q |
201 |
gaaaagaataaaacacattctctacacaggccacatggtctctgcttct |
249 |
Q |
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| T |
34260067 |
gaaaagaataaaacacattctctacacaggccacatggtctttgcttct |
34260115 |
T |
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Back To:
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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 43112087 - 43112261
Alignment:
| Q |
57 |
ttcaataactggcactcgtcaataatgaaaaccttaaaacgagaggaaacaggaggtgta---cacgcattcttaacaagggatttaacctggtctgtgt |
153 |
Q |
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||||||||||||||||| ||||||||||| |||||| |||| || |||| ||||| ||| || ||||||||||||||||||||| ||| ||| | |
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| T |
43112087 |
ttcaataactggcactcatcaataatgaacaccttataacgtgatgaaaaaggagctgttgtgcaagcattcttaacaagggatttagccttgtccggac |
43112186 |
T |
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| Q |
154 |
gattgattctcacagaatccacttccttaacatctttacttcttccagaaaagaataaaacacattctctacaca |
228 |
Q |
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|||| || |||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
43112187 |
gatttatcctcaaagagtcgacttccttaacatctttacttcttccagaaaagaacaaaacacattcactacaca |
43112261 |
T |
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