View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8317_low_1 (Length: 416)
Name: NF8317_low_1
Description: NF8317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8317_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 4939117 - 4939504
Alignment:
| Q |
1 |
tcaccttcagaatcaataatatctaaggaaagagttaacgtcattaccacttgcatcactcccctcctctccccaaaaaggcatgtccgcaa------gc |
94 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
4939117 |
tcaccttcagaatcaataatatctaaggaaagagttaacgtcattaccacttacatcactcccctcctctccccaaaaaggcatgtccgcaaccgcaagc |
4939216 |
T |
|
| Q |
95 |
caagcaactgtaacacgcacatctcatcatacaaggaagttaaagccttatttttgtgg---tcagcaatgtcccactaagtacttgtttttcattcagg |
191 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4939217 |
caagcaactgtaacacgcacatctcatcatacaaggaagttaaagccttatttttgtggtggtcagcaatgtcccactaagtacttgtttttcattcagg |
4939316 |
T |
|
| Q |
192 |
ttttagattatcaatcacataaacaaagcaaccctgtatgtgaacgaaattcaaaatttccacatgggtttgtgattaggaacaaaagaaattaagtaag |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4939317 |
ttttagattatcaatcacataaacaaagcaaccctgtatgtgaacgaaattcaaaatttccacatgggtttgtgattaggaacaaaagaaattaagtaag |
4939416 |
T |
|
| Q |
292 |
aaacaattatctttttaaattcattgaataattagatatatcatgtctaatattctagaacaaatatatcgattattcaatgaatcta |
379 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4939417 |
aaacaattatctttttaaattcattgaataattatatatatcatgtctaatattctagaacaaatacatcgattattcaatgaatcta |
4939504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 6604450 - 6604413
Alignment:
| Q |
288 |
taagaaacaattatctttttaaattcattgaataatta |
325 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
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|
| T |
6604450 |
taagaaacaattgactttttaaattcattgaataatta |
6604413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 32902896 - 32902859
Alignment:
| Q |
288 |
taagaaacaattatctttttaaattcattgaataatta |
325 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
32902896 |
taagaaaaaattgtctttttaaattcattgaataatta |
32902859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 16412311 - 16412273
Alignment:
| Q |
341 |
atattctagaacaaatatatcgattattcaatgaatcta |
379 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
16412311 |
atattctagaccaaatatatcaattattcaatgaatcta |
16412273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 22210809 - 22210846
Alignment:
| Q |
288 |
taagaaacaattatctttttaaattcattgaataatta |
325 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
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|
| T |
22210809 |
taagaaacaattgactttttaaattcattgaataatta |
22210846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 9373522 - 9373485
Alignment:
| Q |
288 |
taagaaacaattatctttttaaattcattgaataatta |
325 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
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|
| T |
9373522 |
taagaaacaattgactttttaaattcattgaataatta |
9373485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 19512751 - 19512787
Alignment:
| Q |
288 |
taagaaacaattatctttttaaattcattgaataatt |
324 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| |
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|
| T |
19512751 |
taagaaacaattgactttttaaattcattgaataatt |
19512787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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