View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8317_low_2 (Length: 282)

Name: NF8317_low_2
Description: NF8317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8317_low_2
NF8317_low_2
[»] chr5 (5 HSPs)
chr5 (1-262)||(4938669-4938930)
chr5 (68-190)||(32362752-32362874)
chr5 (68-181)||(39239102-39239215)
chr5 (68-186)||(13478992-13479110)
chr5 (127-188)||(4218774-4218835)
[»] chr7 (6 HSPs)
chr7 (69-262)||(38970630-38970823)
chr7 (68-160)||(12117036-12117128)
chr7 (96-188)||(38352268-38352360)
chr7 (75-188)||(20354843-20354956)
chr7 (68-181)||(45548793-45548906)
chr7 (96-188)||(39770270-39770362)
[»] chr3 (6 HSPs)
chr3 (68-262)||(49406624-49406818)
chr3 (68-201)||(48886122-48886255)
chr3 (68-181)||(12975494-12975607)
chr3 (68-201)||(31169567-31169700)
chr3 (68-181)||(51305117-51305230)
chr3 (69-181)||(36177884-36177996)
[»] chr2 (4 HSPs)
chr2 (70-262)||(13150908-13151100)
chr2 (68-201)||(5144664-5144797)
chr2 (68-205)||(7762482-7762619)
chr2 (125-188)||(17486456-17486519)
[»] chr4 (11 HSPs)
chr4 (68-201)||(53346988-53347121)
chr4 (68-201)||(33524025-33524158)
chr4 (85-201)||(33609603-33609719)
chr4 (68-186)||(17329209-17329327)
chr4 (128-186)||(23389431-23389489)
chr4 (68-181)||(19273470-19273583)
chr4 (68-181)||(13093572-13093685)
chr4 (68-181)||(35809948-35810061)
chr4 (96-188)||(48403229-48403321)
chr4 (69-205)||(16171192-16171327)
chr4 (87-181)||(27864465-27864559)
[»] chr8 (5 HSPs)
chr8 (68-183)||(30528944-30529059)
chr8 (68-199)||(44503916-44504047)
chr8 (68-186)||(40284157-40284275)
chr8 (68-181)||(26245185-26245298)
chr8 (96-181)||(23550411-23550496)
[»] chr1 (1 HSPs)
chr1 (68-190)||(45364134-45364256)
[»] scaffold0016 (1 HSPs)
scaffold0016 (68-162)||(65714-65808)
[»] scaffold1905 (1 HSPs)
scaffold1905 (96-181)||(754-839)
[»] chr6 (2 HSPs)
chr6 (68-181)||(26653557-26653670)
chr6 (68-181)||(26759525-26759638)
[»] scaffold0004 (1 HSPs)
scaffold0004 (108-201)||(106480-106573)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 4938930 - 4938669
Alignment:
Q  1 gaaaatataggggtagaaagaaccctactaatggttaataagttaaaagaccgaggttccgttcaacgaccatttacaatggtctattgaatgtcatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4938930 gaaaatataggggtagaaagaaccctactaatggttaataagttaaaagaccgaggttccgttcaacgaccatttacaatggcctattgaatgtcatttt 4938831  T
Q  101 caacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacatgttgaaattctgaccgaagaggccac 200  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  4938830 gaacatattgaaaccattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacatgttgaaattttgaccgaagaggccat 4938731  T
Q  201 gtggcacgctcgtattggaccaaccatggcgtgtggcatgcacgtgccgacagggcgcgtgg 262  Q
    |||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||||||||    
T  4938730 gtggcacgcttgtattggaccaaccatggagtgtggcatgcacgcgtcgaccgggcgcgtgg 4938669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 68 - 190
Target Start/End: Original strand, 32362752 - 32362874
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||| ||||||||  |||||||||||||||||||| | ||||||  |||| || ||| |||||||||||||||||||||| ||||||| ||||||| |    
T  32362752 gaccatctacaatggcttattgaatgtcattttcaacctgttgaaatcattggagagggttattgaaaatgagagaagaggagagaggtggtgaaaggtt 32362851  T
Q  168 taaacatgttgaaattctgaccg 190  Q
    |||||||||||||| ||||||||    
T  32362852 taaacatgttgaaagtctgaccg 32362874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 39239215 - 39239102
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  | ||||||| ||| |||||||| |||| || |||| ||  || ||||||| ||||| |||||||| ||||||| ||||| |||    
T  39239215 gaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggaggaggctattgaatatgagggaagaggagagaggtgttgaaaaggt 39239116  T
Q  168 taaacatgttgaaa 181  Q
    | ||||||||||||    
T  39239115 tcaacatgttgaaa 39239102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 13478992 - 13479110
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  | ||||||||||| |||||||| |||| || |||  ||  || | ||||| ||||| |||||||| ||||||| ||||| |||    
T  13478992 gaccatttacaatggcttgttgaatgtcatattcaacatgttgagaccatttgaggaggctgttgaatatgagggaagaggagagaggtgttgaaaaggt 13479091  T
Q  168 taaacatgttgaaattctg 186  Q
    | |||||||||||| ||||    
T  13479092 tcaacatgttgaaagtctg 13479110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 4218774 - 4218835
Alignment:
Q  127 gtattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacatgttgaaattctgac 188  Q
    |||||||||||||| |||||| | ||||||||||||| | ||||  ||||||||| ||||||    
T  4218774 gtattgaaaatgagggaagagaagagaggtgatgaaatgattaagtatgttgaaagtctgac 4218835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 38970823 - 38970630
Alignment:
Q  69 accatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggtt 168  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||    
T  38970823 accatttacaatggcctattgaatgccattttcaacatattgaaactattggagtggggtattgaaaatgagagaagaggacggaggtgatgaaagggtt 38970724  T
Q  169 aaacatgttgaaattctgaccgaagaggccacgtggcacgctcgtattggaccaaccatggcgtgtggcatgcacgtgccgacagggcgcgtgg 262  Q
    ||||||||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38970723 aaacatgttaaaattatgaccggagaggccacgtgtcacgctcgtattggaccaaccatggcgtgtggcatgcacgcgccgacagggcgcgtgg 38970630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 12117128 - 12117036
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatg 160  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12117128 gaccatttacaatggcctattgaaggccattttcaacatattgaaaccattgtagtggggtattgaaaatgagagaagaggaaagaggtgatg 12117036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 38352360 - 38352268
Alignment:
Q  96 attttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacatgttgaaattctgac 188  Q
    |||||||| || ||||||  |||| ||  |||||||||||||||| |||||||| ||||||||||||||| ||||  ||||||||| ||||||    
T  38352360 attttcaatattttgaaatgattggagaagggtattgaaaatgagggaagaggagagaggtgatgaaaggattaagtatgttgaaagtctgac 38352268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 20354956 - 20354843
Alignment:
Q  75 tacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacat 174  Q
    ||||||||  ||||||| |  |||||||| || ||||||  |||| ||  ||||||||||||||||  ||||||| ||||||||||||||| ||||  ||    
T  20354956 tacaatggcttattgaaagcaattttcaatatgttgaaatgattggagaagggtattgaaaatgaggaaagaggagagaggtgatgaaaggattaagtat 20354857  T
Q  175 gttgaaattctgac 188  Q
    ||||||| ||||||    
T  20354856 gttgaaagtctgac 20354843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 45548793 - 45548906
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  | ||||||  ||| |||||||| |||| ||||||| ||  |  ||||||| ||||| |||||||| ||||||| ||||| |||    
T  45548793 gaccatttacaatggcttgttgaataccatattcaacatgttgagactattggaggagactattgaatatgagggaagaggagagaggtgttgaaaaggt 45548892  T
Q  168 taaacatgttgaaa 181  Q
    | ||||||||||||    
T  45548893 tcaacatgttgaaa 45548906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 39770362 - 39770270
Alignment:
Q  96 attttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacatgttgaaattctgac 188  Q
    |||||||| || ||||||  |||| ||  ||||||||||||||||  ||||||| ||| ||||||||||| ||||  ||||||||| ||||||    
T  39770362 attttcaatatgttgaaatgattgaagaagggtattgaaaatgaggaaagaggagagacgtgatgaaaggattaagtatgttgaaagtctgac 39770270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 68 - 262
Target Start/End: Original strand, 49406624 - 49406818
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  49406624 gaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagcggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 49406723  T
Q  168 taaacatgttgaaattctgaccgaagaggccacgtggcacgctcgtattggaccaaccatggcgtgtggcatgcacgtgccgacagggcgcgtgg 262  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||||||||||||||    
T  49406724 taaacatgttgaaattctgacaggagaggccacgtggcacgctcgtattggaccaaccatggcgcgtggcatgtacgcgctgacagggcgcgtgg 49406818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 48886122 - 48886255
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||| ||||||||  ||||||||| |||||||||| ||||||||  |||| || ||| |||||||||| ||||||||||| ||||||||||||||| |    
T  48886122 gaccatctacaatggcttattgaatgccattttcaacctattgaaatcattggagagggttattgaaaattagagaagaggagagaggtgatgaaaggtt 48886221  T
Q  168 taaacatgttgaaattctgaccgaagaggccacg 201  Q
    |||||||||||||| |||||||| || |||||||    
T  48886222 taaacatgttgaaagtctgaccgtaggggccacg 48886255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 12975607 - 12975494
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||| ||||||||  |||||||||  ||||||||| |||||||| ||||| |||||  ||||||||||||| |||||||||||||||||||||||| |    
T  12975607 gaccatctacaatggcttattgaatgctattttcaacctattgaaattattggagtggcttattgaaaatgagcgaagaggaaagaggtgatgaaaggtt 12975508  T
Q  168 taaacatgttgaaa 181  Q
    ||||||||||||||    
T  12975507 taaacatgttgaaa 12975494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 31169567 - 31169700
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||| ||||||||  | ||||||| ||||||||| |  ||||||  |||| || ||| |||||||||||||||||||||| |||||||||||| || |    
T  31169567 gaccatctacaatggcttgttgaatgccattttcaataggttgaaatcattggagagggttattgaaaatgagagaagaggagagaggtgatgaagggtt 31169666  T
Q  168 taaacatgttgaaattctgaccgaagaggccacg 201  Q
    |||||||||||||| |||||||| || |||||||    
T  31169667 taaacatgttgaaagtctgaccgcaggggccacg 31169700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 51305230 - 51305117
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  | ||||||| ||| |||||||| |||| || |||| ||  || ||||||| ||||| ||||| || ||||||| ||||| |||    
T  51305230 gaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggaggaggctattgaatatgagggaagatgagagaggtgttgaaaaggt 51305131  T
Q  168 taaacatgttgaaa 181  Q
    | ||||||||||||    
T  51305130 tcaacatgttgaaa 51305117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 36177884 - 36177996
Alignment:
Q  69 accatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggtt 168  Q
    ||||||||||||||  | ||||||| ||| |||||||| |||| ||||||| ||  || ||||||| ||||| |||||||  ||||||| ||||  ||||    
T  36177884 accatttacaatggcttgttgaatgccatattcaacatgttgagactattggagaaggctattgaatatgagggaagagggcagaggtgttgaagaggtt 36177983  T
Q  169 aaacatgttgaaa 181  Q
     ||||||||||||    
T  36177984 caacatgttgaaa 36177996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 70 - 262
Target Start/End: Original strand, 13150908 - 13151100
Alignment:
Q  70 ccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggtta 169  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||  ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  13150908 ccatatacaatggtctattgaatgccattttcaatatattgaaatcattatagtggggtattgaaaatgagagaagatgaaagaggtgatgaaaaggtta 13151007  T
Q  170 aacatgttgaaattctgaccgaagaggccacgtggcacgctcgtattggaccaaccatggcgtgtggcatgcacgtgccgacagggcgcgtgg 262  Q
    |||||||||||||| |||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  13151008 aacatgttgaaattttgaccggagaggtcacatggcacgctcgtattggaccaaccaaggcgtgtggcatgcacgcgccgacaaggcgcgtgg 13151100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 5144664 - 5144797
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||| |||  || ||| ||||||||||||||||||||||||||||||||||||||||    
T  5144664 gaccatttacaatggcctattgaatgccattttcaatatattgaaacgattagagagggatattgaaaatgagagaagaggaaagaggtgatgaaagggt 5144763  T
Q  168 taaacatgttgaaattctgaccgaagaggccacg 201  Q
    ||||||| |||||||| ||| |  ||||||||||    
T  5144764 taaacatattgaaattttgaaccgagaggccacg 5144797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 7762482 - 7762619
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  | ||||||| ||||||||| || ||||||  |||| ||  |||||||||||||||| |||||||| ||||| ||||||||| |    
T  7762482 gaccatttacaatggcttgttgaatgccattttcaatatgttgaaatcattggagaagggtattgaaaatgagggaagaggagagaggcgatgaaaggtt 7762581  T
Q  168 taaacatgttgaaattctgaccgaagaggccacgtggc 205  Q
    |||  ||||||||| |||||||| || || ||||||||    
T  7762582 taagtatgttgaaagtctgaccgtaggggacacgtggc 7762619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 17486519 - 17486456
Alignment:
Q  125 gggtattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacatgttgaaattctgac 188  Q
    |||||||||||||||| |||||||| |||||||||| |||| ||||  ||||||||| ||||||    
T  17486519 gggtattgaaaatgagggaagaggagagaggtgatggaaggattaagtatgttgaaagtctgac 17486456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 53346988 - 53347121
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||| |||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  53346988 gaccatttacaatggcctattgaatgccattttcaatatattgaaaccattggagaggggtattgaaaatgagagaaaaggaaagaggtgatgaaagggt 53347087  T
Q  168 taaacatgttgaaattctgaccgaagaggccacg 201  Q
    |||||||||||||||||||| |  ||||||||||    
T  53347088 taaacatgttgaaattctgaaccgagaggccacg 53347121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 201
Target Start/End: Complemental strand, 33524158 - 33524025
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||| ||||||||  ||||||||| |||||||||| ||||||||  |||  || ||| |||||||||||||||||||||| ||||||||||||||| |    
T  33524158 gaccatctacaatggcttattgaatgccattttcaacctattgaaatcatttgagagggttattgaaaatgagagaagaggagagaggtgatgaaaggtt 33524059  T
Q  168 taaacatgttgaaattctgaccgaagaggccacg 201  Q
    |||||||||||||| |||||||| || |||||||    
T  33524058 taaacatgttgaaagtctgaccgcaggggccacg 33524025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 33609719 - 33609603
Alignment:
Q  85 tattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacatgttgaaattc 184  Q
    |||||||||||||||||||| ||||||||  |||| ||||   |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  33609719 tattgaatgtcattttcaacctattgaaatcattggagtgacttattgaaaatgagagaagaggaaagaggtgatgaaaggtttaaacatgttgaaagtc 33609620  T
Q  185 tgaccgaagaggccacg 201  Q
    |||| | || |||||||    
T  33609619 tgactggaggggccacg 33609603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 17329209 - 17329327
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||| |||||||| ||||||||  | ||||||||||| ||||||| |||| ||||   ||||||||||||||||||||||||||||||||||||| ||    
T  17329209 gaccatctacaatggcctattgaaaatgattttcaacatgttgaaaccattggagtgccctattgaaaatgagagaagaggaaagaggtgatgaaagtgt 17329308  T
Q  168 taaacatgttgaaattctg 186  Q
    |||||||||||||| ||||    
T  17329309 taaacatgttgaaaatctg 17329327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 23389431 - 23389489
Alignment:
Q  128 tattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacatgttgaaattctg 186  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  23389431 tattgaaaatgagagaagaggaaagaggtgatgaaagtattaaacatgttgaaaatctg 23389489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 19273583 - 19273470
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  | ||||||| ||| |||||||| |||| || |||| ||  || ||||||| ||||| |||||||| ||||||| ||||| |||    
T  19273583 gaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggaggaggctattgaatatgagggaagaggagagaggtgttgaaaaggt 19273484  T
Q  168 taaacatgttgaaa 181  Q
    | ||||||||||||    
T  19273483 tcaacatgttgaaa 19273470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 13093572 - 13093685
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  | ||||||| ||| |||||||| |||| || |||| ||  || || |||| ||||| |||||||| ||||||| ||||| |||    
T  13093572 gaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggaggaggctaatgaatatgagggaagaggagagaggtgttgaaaaggt 13093671  T
Q  168 taaacatgttgaaa 181  Q
    | ||||||||||||    
T  13093672 tcaacatgttgaaa 13093685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 35810061 - 35809948
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  | ||||||| ||| |||||||| |||| || |||| ||  || || |||| ||||| |||||||| ||||||| ||||| |||    
T  35810061 gaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggaggaggctactgaatatgagggaagaggagagaggtgttgaaaaggt 35809962  T
Q  168 taaacatgttgaaa 181  Q
    | ||||||||||||    
T  35809961 tcaacatgttgaaa 35809948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 48403229 - 48403321
Alignment:
Q  96 attttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacatgttgaaattctgac 188  Q
    |||||||| || ||||||  |||| ||  |||||||||||||||| |||||| | ||||||||||||||| ||||  ||||||||| ||||||    
T  48403229 attttcaatatgttgaaatgattggagaagggtattgaaaatgagggaagagaagagaggtgatgaaaggattaagtatgttgaaagtctgac 48403321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 205
Target Start/End: Original strand, 16171192 - 16171327
Alignment:
Q  69 accatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggtt 168  Q
    ||||||||||||||  | ||||||| ||| |||||||| ||||  | |||| ||  || ||||||| || || |||||||| ||||||||||||||| ||    
T  16171192 accatttacaatggcttgttgaatgccatattcaacatgttgagcc-attggagaaggctattgaatataagggaagaggagagaggtgatgaaaggatt 16171290  T
Q  169 aaacatgttgaaattctgaccgaagaggccacgtggc 205  Q
    ||  ||||||||  |||||||| || || ||||||||    
T  16171291 aagtatgttgaatatctgaccgcaggggacacgtggc 16171327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 27864559 - 27864465
Alignment:
Q  87 ttgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacatgttgaaa 181  Q
    ||||||| ||| |||||||| |||| ||  ||| ||  || ||||||| ||||| |||||||| ||||||| ||||| |||| ||||||||||||    
T  27864559 ttgaatgccatattcaacatgttgagaccgttggaggaggctattgaatatgagggaagaggagagaggtgttgaaaaggttcaacatgttgaaa 27864465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 30528944 - 30529059
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  |||||||||| |||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  30528944 gaccatttacaatggcatattgaatgttattttcaatatattgaaaccattggagaggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 30529043  T
Q  168 taaacatgttgaaatt 183  Q
    ||||||||||||||||    
T  30529044 taaacatgttgaaatt 30529059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 44504047 - 44503916
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||| ||||||||  ||||||||| |||||||| ||  ||||||  |||| || ||| |||||||||||||||||||||| ||||||||||||||| |    
T  44504047 gaccatctacaatggcttattgaatgccattttcatcaggttgaaatcattggagagggttattgaaaatgagagaagaggagagaggtgatgaaaggtt 44503948  T
Q  168 taaacatgttgaaattctgaccgaagaggcca 199  Q
    ||||||| |||||| |||||||| || |||||    
T  44503947 taaacatattgaaagtctgaccgcaggggcca 44503916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 186
Target Start/End: Complemental strand, 40284275 - 40284157
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  | ||||||| ||| |||||||| |||| || |||| ||  || ||||||| ||||| |||||||| ||||||| ||||| |||    
T  40284275 gaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggaggaggctattgaatatgagggaagaggagagaggtgttgaaaaggt 40284176  T
Q  168 taaacatgttgaaattctg 186  Q
    | |||||||||||| ||||    
T  40284175 tcaacatgttgaaagtctg 40284157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 26245298 - 26245185
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  | ||||||| ||| |||||||| |||| || |||| ||  || ||||||| ||||| |||||||| ||||||| ||||| |||    
T  26245298 gaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggaggaggctattgaatatgagggaagaggagagaggtgttgaaaaggt 26245199  T
Q  168 taaacatgttgaaa 181  Q
    | ||||||||||||    
T  26245198 tcaacatgttgaaa 26245185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 23550496 - 23550411
Alignment:
Q  96 attttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacatgttgaaa 181  Q
    |||||||| || ||||||  |||| ||  ||||||||||||||||  ||||||| ||||||||||||||| ||||  |||||||||    
T  23550496 attttcaatatgttgaaatgattggagaagggtattgaaaatgaggaaagaggagagaggtgatgaaaggattaagtatgttgaaa 23550411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 190
Target Start/End: Complemental strand, 45364256 - 45364134
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  | ||||||||||||||||| || ||||||  |||| ||  |||||||||||||||| |||||||| |||| |||||||||| |    
T  45364256 gaccatttacaatggcttgttgaatgtcattttcaatatgttgaaatcattggagaagggtattgaaaatgagggaagaggagagagatgatgaaaggtt 45364157  T
Q  168 taaacatgttgaaattctgaccg 190  Q
    |||  || |||||| ||||||||    
T  45364156 taagtatcttgaaagtctgaccg 45364134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 65714 - 65808
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaa 162  Q
    |||||||||||||||| | ||||||||||| |||||||| |||| || |||| ||  || ||||||| ||||| |||||||| ||||||| ||||    
T  65714 gaccatttacaatggtttgttgaatgtcatattcaacatgttgagaccattggaggaggctattgaatatgagggaagaggagagaggtgttgaa 65808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1905 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1905
Description:

Target: scaffold1905; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 754 - 839
Alignment:
Q  96 attttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacatgttgaaa 181  Q
    |||||||| || ||||||  |||| ||  |||||||||||||||| |||||||| ||||||||||||||| ||||  |||||||||    
T  754 attttcaatatgttgaaatgattggagaagggtattgaaaatgagggaagaggagagaggtgatgaaaggattaagtatgttgaaa 839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 26653557 - 26653670
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  | ||||||| ||| |||||||| |||| || |||| ||  || ||||||| ||||| |||| ||| ||||||| ||||| |||    
T  26653557 gaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggaggaggctattgaatatgagggaaggggagagaggtgttgaaaaggt 26653656  T
Q  168 taaacatgttgaaa 181  Q
    | ||||||||||||    
T  26653657 tcaacatgttgaaa 26653670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 26759525 - 26759638
Alignment:
Q  68 gaccatttacaatggtctattgaatgtcattttcaacatattgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggt 167  Q
    |||||||||||||||  | ||||||| ||| |||||||| |||| || |||| ||  || ||||||| ||||| |||| ||| ||||||| ||||| |||    
T  26759525 gaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggaggaggctattgaatatgagggaaggggagagaggtgttgaaaaggt 26759624  T
Q  168 taaacatgttgaaa 181  Q
    | ||||||||||||    
T  26759625 tcaacatgttgaaa 26759638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 106573 - 106480
Alignment:
Q  108 ttgaaactattgtagtggggtattgaaaatgagagaagaggaaagaggtgatgaaagggttaaacatgttgaaattctgaccgaagaggccacg 201  Q
    ||||||| |||| || ||| |||||||||||||  ||||||| ||||||||||||| | || |||  ||||||| |||||| || | |||||||    
T  106573 ttgaaaccattggagggggctattgaaaatgaggaaagaggagagaggtgatgaaatgtttcaactagttgaaaatctgacggagggggccacg 106480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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