View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8317_low_3 (Length: 279)
Name: NF8317_low_3
Description: NF8317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8317_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 39936076 - 39936338
Alignment:
| Q |
1 |
tcataatcatcttcttaacaaattgacgttgcaaggggatcttgtggttgttatgctatgatggtttgtaacaaattcctatgtttgtaatctaaagatg |
100 |
Q |
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| T |
39936076 |
tcataatcatcttcttaacaaattgacattgcaaggggatcttgtggttgttatgctatgatggtttgtaacaaattccgatatttggaatctaaagatg |
39936175 |
T |
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| Q |
101 |
ttgtcgaacttccgctggttatggcataaaatgtagtaaaacgacactgatttaatcaccggagaatgaatttcggtgagcctgattttcgccggcgatg |
200 |
Q |
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| T |
39936176 |
ctgtcgaacttccgctggttatggcataaaatgtagtaaaacgacactgatttaatcaccggagaaggaatttcggtgagcctgattttcgccggcgatg |
39936275 |
T |
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| Q |
201 |
gtggtggaggagttgttgttcacgtgttctctgtggatgttgattgtcatgttggttttaatt |
263 |
Q |
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| T |
39936276 |
gtggtggaggagttgttgttcacgtgttctctgtggatgttgattgtcatgttggttttaatt |
39936338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 47857033 - 47856855
Alignment:
| Q |
1 |
tcataatcatcttcttaacaaattgacgttgcaaggggatcttgtggttgttatgctatgatggtttgtaacaaattcctatgtttgtaatctaaagatg |
100 |
Q |
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| T |
47857033 |
tcataatcatcttcttaacaaattgacgttgcaaggggatcttgtggctgttatgctatgatagtttgtaacaaattctgatgtttcgaatctaaagatg |
47856934 |
T |
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| Q |
101 |
ttgtcgaacttccgctggttatggcataaaatgtagtaaaacgacactgatttaatcaccggagaatgaatttcggtga |
179 |
Q |
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| T |
47856933 |
ctgtcgaacttccgctggttatggcataagatgtagtaaaacgacactgatttaatcaccggagaaggaatttcggtga |
47856855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 47856807 - 47856724
Alignment:
| Q |
180 |
gcctgattttcgccggcgatggtggtggaggagttgttgttcacgtgttctctgtggatgttgattgtcatgttggttttaatt |
263 |
Q |
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| T |
47856807 |
gcctgattttcgccggcgacggtggtggaggagttgttgttcacgtgttctctgtggatgttgattgtcatgttggttttaatt |
47856724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 1178413 - 1178330
Alignment:
| Q |
180 |
gcctgattttcgccggcgatggtggtggaggagttgttgttcacgtgttctctgtggatgttgattgtcatgttggttttaatt |
263 |
Q |
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| T |
1178413 |
gcctgattttcgccggcgacggtggtggaggagtttttgttcacgtgttctctatggatgttgattgtcatgctggttttaatt |
1178330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 43773644 - 43773604
Alignment:
| Q |
32 |
caaggggatcttgtggttgttatgctatgatggtttgtaac |
72 |
Q |
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| T |
43773644 |
caaggggattttctcgttgttatgctatgatggtttgtaac |
43773604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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