View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8318_high_12 (Length: 237)
Name: NF8318_high_12
Description: NF8318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8318_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 53472890 - 53473113
Alignment:
| Q |
1 |
atggtcggccataatttcaagagtttatagagttcaacaagggtggtatgttaggttcctctttaaggttgtaatccatcagttcatgcccctaagtagc |
100 |
Q |
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| T |
53472890 |
atggtcggccataatttcaagagtttatagagttcaacaagggtggtatgttaggttcctctttaaggttgtaatccatcagttcatgcccctaagtagc |
53472989 |
T |
|
| Q |
101 |
acatagtaatccatcatcactatctggtaatctattttgtggtccataaagataggtaatactacttgactaagtgtcctttgcgtcctcgacttggtcc |
200 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53472990 |
acatagtaatccatcattactatctggtaatctattttgtggtccataaagatagataatactacttgactaagtgtcctttgcgtcctcgacttggtcc |
53473089 |
T |
|
| Q |
201 |
ttgcttaatcaatcacacttatct |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
53473090 |
ttgcttaatcaatcacacttatct |
53473113 |
T |
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