View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8318_high_3 (Length: 486)
Name: NF8318_high_3
Description: NF8318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8318_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 3 - 470
Target Start/End: Complemental strand, 45123612 - 45123145
Alignment:
| Q |
3 |
tttacactgttaaatattgtactcttctctctgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattctgtaata |
102 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45123612 |
tttacactgtcaaatattgtactattctctctgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattttgtaata |
45123513 |
T |
|
| Q |
103 |
gacattcatagaaggatacatttgagaaacatttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcac |
202 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45123512 |
gacattcatagaaggatatatttgagaaacatttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcac |
45123413 |
T |
|
| Q |
203 |
aacataggtggaaacttcaaaaagcggagacgaaactatgatcattgtccaataacaactagaaaataatactatatgcaaacttttacaacacatagac |
302 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45123412 |
aacataggtagaaacttcaaaaagcggagacgaaactatgatcattgtccaatgacaactagaaaataatactatatgcaaacttttacaacacatagac |
45123313 |
T |
|
| Q |
303 |
tagtcaaacactccattgatcccggtacacccacaatctccaaagcaataccaaactatatctacaacactctaccgcaagagtataatagaaaagataa |
402 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45123312 |
tagtcaaacactccattgaccccgatacacccacaatctccaaagcaataccaaactatatctacaacactctaccgcaagagtataatagaaaagataa |
45123213 |
T |
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| Q |
403 |
aattcatatatatacttaaaatatttctgactgatgcatcttgaaatacagaaatcgagcttatatat |
470 |
Q |
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| T |
45123212 |
aattcagatatatacttaaaatatttctgattgatgtatcttgaaatacagaaatcgagcttatatat |
45123145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 22190644 - 22190691
Alignment:
| Q |
246 |
attgtccaataacaactagaaaataatactatatgcaaacttttacaa |
293 |
Q |
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| T |
22190644 |
attgtccaatgacaactagagaataacactatatgcaaatttttacaa |
22190691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 470
Target Start/End: Original strand, 35397399 - 35397485
Alignment:
| Q |
384 |
agtataatagaaaagataaaattcatatatatacttaaaatatttctgactgatgcatcttgaaatacagaaatcgagcttatatat |
470 |
Q |
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||||||| ||||||| ||| ||| ||||| ||||||||| ||||||||||||||||||| |||| ||||| ||| |||||||| |
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| T |
35397399 |
agtataagagaaaaggaaaatgtcacatataaacttaaaatgtttctgactgatgcatcttataataaagaaagagagtttatatat |
35397485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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