View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8318_high_9 (Length: 256)
Name: NF8318_high_9
Description: NF8318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8318_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 30383712 - 30383491
Alignment:
| Q |
20 |
caatatacgtggcttcagaagcctacaattaatctcataactcagccgctgaaagaagnnnnnnnnn-tgtatttgcaccattgaatctgtatgatatgt |
118 |
Q |
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| T |
30383712 |
caatatatgtggcttcagaagcctacaattaatctcataactcagccgctgaaagaaggaaaaaaaaatgtatttgcaccattgaatctgtatgatatgt |
30383613 |
T |
|
| Q |
119 |
ttaaaacaattaaatttggaacccaaagacaaaagtatgcatgcaatagcagcactcaaaagatctttgaaaagcctaaggataacaatgttaagtcact |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30383612 |
ttaaaacaattaaatttggaacccaaagacaaaagtatgcatgcaatagcagcactcaaaagatctttgaaaagcctaaggataacaatgttaagtcact |
30383513 |
T |
|
| Q |
219 |
ccaagcaactactttgaagtat |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
30383512 |
ccaagcaactactttgaagtat |
30383491 |
T |
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