View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8318_low_12 (Length: 238)

Name: NF8318_low_12
Description: NF8318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8318_low_12
NF8318_low_12
[»] chr4 (10 HSPs)
chr4 (1-238)||(53472532-53472768)
chr4 (10-180)||(53469652-53469823)
chr4 (7-138)||(27272572-27272705)
chr4 (41-180)||(32015122-32015262)
chr4 (1-149)||(10395953-10396102)
chr4 (1-152)||(50887389-50887540)
chr4 (94-180)||(29235206-29235291)
chr4 (95-180)||(9010892-9010977)
chr4 (1-133)||(21206356-21206491)
chr4 (10-178)||(13816904-13817073)
[»] chr2 (7 HSPs)
chr2 (10-180)||(8761171-8761343)
chr2 (49-180)||(37965518-37965651)
chr2 (59-180)||(10128460-10128582)
chr2 (1-127)||(25550091-25550217)
chr2 (138-180)||(15140727-15140769)
chr2 (1-55)||(37965269-37965323)
chr2 (91-168)||(15140779-15140856)
[»] chr3 (5 HSPs)
chr3 (1-180)||(30046377-30046558)
chr3 (1-152)||(25889611-25889763)
chr3 (64-180)||(31141363-31141480)
chr3 (113-150)||(25578999-25579036)
chr3 (24-135)||(37133784-37133896)
[»] chr7 (9 HSPs)
chr7 (6-149)||(7961767-7961911)
chr7 (1-152)||(11269944-11270096)
chr7 (92-168)||(1103129-1103205)
chr7 (6-88)||(36207996-36208078)
chr7 (17-168)||(1716635-1716787)
chr7 (118-180)||(1345068-1345129)
chr7 (130-179)||(1103078-1103127)
chr7 (10-54)||(11269802-11269846)
chr7 (16-70)||(11280342-11280396)
[»] chr1 (6 HSPs)
chr1 (21-149)||(22827037-22827166)
chr1 (21-149)||(22840959-22841088)
chr1 (9-180)||(24284782-24284954)
chr1 (10-90)||(20260944-20261024)
chr1 (41-180)||(24272707-24272846)
chr1 (21-105)||(22826642-22826727)
[»] chr6 (12 HSPs)
chr6 (10-180)||(14721668-14721838)
chr6 (21-149)||(13557985-13558114)
chr6 (8-149)||(2921839-2921981)
chr6 (6-150)||(27340600-27340743)
chr6 (6-150)||(27401340-27401483)
chr6 (1-139)||(16910087-16910225)
chr6 (1-125)||(13555994-13556119)
chr6 (10-152)||(11678827-11678966)
chr6 (21-146)||(2923168-2923295)
chr6 (22-128)||(11677133-11677240)
chr6 (44-169)||(22880002-22880128)
chr6 (44-169)||(22898117-22898243)
[»] chr5 (4 HSPs)
chr5 (17-152)||(19670657-19670793)
chr5 (24-152)||(32795543-32795672)
chr5 (39-133)||(26896586-26896681)
chr5 (76-152)||(32796359-32796436)
[»] chr8 (2 HSPs)
chr8 (43-167)||(33897182-33897307)
chr8 (21-102)||(42001905-42001987)
[»] scaffold0007 (1 HSPs)
scaffold0007 (123-180)||(260473-260530)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 53472532 - 53472768
Alignment:
Q  1 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaacttttattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  53472532 taatcgataattacagatactgaatagtagaggtaacgctagctatagcaaaacccactaaccattggtgcatgaaatactaacacacaaacttttattt 53472631  T
Q  101 atatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaatacttgggagtgtattagac 200  Q
    |||||||||  ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||||| | ||    
T  53472632 atatggcaag-tctttgcatatttcttcgtattatccgatgtggaacattttcccaacactaattcaaggcatatttcaatactttggagtgtataaaac 53472730  T
Q  201 ttggaagaaaccattcgaatttaagtagaaaaaattgt 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  53472731 ttggaagaaaccattcgaatttaagtagaaaaaattgt 53472768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 53469652 - 53469823
Alignment:
Q  10 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggca 108  Q
    ||||||||||||||||| || |||||||  | ||||||  |||| ||| |||| |||| | || |||||||||| |||||| ||||||||||||||| |     
T  53469652 attacagatactgaataatataggtaacattggctatagtaaaatccactaactattgattcaagaaatactaacacacaagacttttatttatatgacc 53469751  T
Q  109 aaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 180  Q
    || ||||||||||||||||| ||||||| ||||| | ||||||| |||||| ||||| ||| ||||||||||    
T  53469752 aagtctttgcatatttcttcatattatctgatgtagaacattttcccaacattaattaaaggcatatttcaa 53469823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 27272705 - 27272572
Alignment:
Q  7 ataattacagatactgaatagtagaggtaacgctagctataacaaaa-cccattaaccattggtgcatgaaatactaatacacaa-acttttatttatat 104  Q
    ||||||||| ||  ||||||||||| |||| |||||||||| ||||| |||| |||| ||||||||| |||||||||| |||||| ||||||||||||||    
T  27272705 ataattacaaattttgaatagtagaagtaatgctagctatagcaaaaacccactaactattggtgcaagaaatactaacacacaagacttttatttatat 27272606  T
Q  105 ggcaaaatctttgcatatttcttcgtattatccg 138  Q
    | | ||| |||||||||||||||| |||||||||    
T  27272605 gaccaaacctttgcatatttcttcatattatccg 27272572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 180
Target Start/End: Complemental strand, 32015262 - 32015122
Alignment:
Q  41 agctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccga 139  Q
    ||||||| ||||||||| |||| ||||||||| |||||||||| ||||||| | ||||||||| | || || ||||||||||| ||||| ||||||   |    
T  32015262 agctatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctattatttta 32015163  T
Q  140 tgtgggacatttttccaacactaattcaagacatatttcaa 180  Q
    |||| ||| ||||| ||||||||||||||||||||||||||    
T  32015162 tgtgagacttttttacaacactaattcaagacatatttcaa 32015122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 10396102 - 10395953
Alignment:
Q  1 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 99  Q
    ||||||||||| ||||||||||||||||||| | ||| | | ||||| || |||||| |||| |||| |||| |||||||||| ||||||  ||||||||    
T  10396102 taatcgataatcacagatactgaatagtagaaggaacaccatctatagcataacccactaactattgatgcaagaaatactaacacacaaggcttttatt 10396003  T
Q  100 tatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacat 149  Q
    ||||||||  | ||||||||||||||||| | || || |||||| |||||    
T  10396002 tatatggccgagtctttgcatatttcttcatcttctctgatgtgagacat 10395953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 50887389 - 50887540
Alignment:
Q  1 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 99  Q
    |||| |||||||||| ||||| ||||||||||||||  ||||||||| ||||||||| |||| ||| ||| | | || || ||  ||||| || ||||||    
T  50887389 taattgataattacatatactaaatagtagaggtaatactagctatagcaaaacccactaactattagtgtaagcaaaaccaacgcacaagacatttatt 50887488  T
Q  100 tatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttt 152  Q
    |||||||| ||  |||||||||||| ||| |||||| ||||| ||||||||||    
T  50887489 tatatggccaagcctttgcatattt-ttcatattattcgatgcgggacatttt 50887540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 29235206 - 29235291
Alignment:
Q  94 tttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 180  Q
    |||||||||||||| || ||||||||||||| ||| ||| ||||||||||||| ||||| |||||| |||||||||  |||||||||    
T  29235206 tttatttatatggccaagtctttgcatattttttcatataatccgatgtgggatattttcccaaca-taattcaaggaatatttcaa 29235291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 9010892 - 9010977
Alignment:
Q  95 ttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 180  Q
    ||||||||||||| || || | |||||||||||| ||| |||||||||||||||| || | ||||||||||| || ||||||||||    
T  9010892 ttatttatatggccaagtcatagcatatttcttcatatcatccgatgtgggacatattcctaacactaattccaggcatatttcaa 9010977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 21206491 - 21206356
Alignment:
Q  1 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaa-cccattaaccattggtgca-tgaaatactaatacacaaa-ctttta 97  Q
    |||| |||||||||| ||  |||||| |||| |||| |||| ||||||||||| |||| |||| ||||||| | | |||||||||||||||   ||||||    
T  21206491 taattgataattacaaattttgaataatagaagtaatgctaactataacaaaaacccactaactattggtgtaataaaatactaatacacatggctttta 21206392  T
Q  98 tttatatggcaaaatctttgcatatttcttcgtatt 133  Q
    |||||||| | ||  ||||| |||||||||||||||    
T  21206391 tttatatgaccaagcctttgtatatttcttcgtatt 21206356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 13817073 - 13816904
Alignment:
Q  10 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaact-tttatttatatggca 108  Q
    |||||| ||||||||||| || || ||  ||||||||  |||||| || |||| ||| || || |||||| ||| ||| ||  | |||||||||||| |     
T  13817073 attacaaatactgaatagcagtggcaatactagctatcgcaaaactcactaactatttgtacaagaaataataacacataaggtctttatttatatgacc 13816974  T
Q  109 aaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttc 178  Q
    || |||| |||||||||||| |||| | ||||||| ||| |||| |||||| ||||||||  ||||||||    
T  13816973 aagtcttcgcatatttcttcatattcttcgatgtgagactttttcccaacattaattcaatgcatatttc 13816904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 8761171 - 8761343
Alignment:
Q  10 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatg-gc 107  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||| |||| ||||||||| |||||||||| |||||| |||||||||||||||  |    
T  8761171 attacagatactgaatagtagagataatgctagctataacaaaatccactaacaattggtgcaagaaatactaacacacaagacttttatttatatgacc 8761270  T
Q  108 aaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 180  Q
    ||| | ||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||    
T  8761271 aaagtatttgcatatttcttcatattatctgatgtgggacattttcccaacacaaattcaagacatatttcaa 8761343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 37965518 - 37965651
Alignment:
Q  49 caaaacccattaaccattggtgcatgaaatactaatacacaaa--cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtggga 146  Q
    |||||||||||||| ||||||||| |||||||||| |||||||  |||||||||||||  | || ||||||||||||||||| |||||||||||||| ||    
T  37965518 caaaacccattaactattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattatccgatgtgaga 37965617  T
Q  147 catttttccaacactaattcaagacatatttcaa 180  Q
    |||||| |||||||||||||||| ||||||||||    
T  37965618 cattttcccaacactaattcaaggcatatttcaa 37965651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 10128582 - 10128460
Alignment:
Q  59 taaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaa 157  Q
    |||| ||||||||| |||||||||| |||||| ||||||||||||||| | || ||||| ||||||||||| |||| |||||||||| | ||||||||||    
T  10128582 taactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtggaatatttttccaa 10128483  T
Q  158 cactaattcaagacatatttcaa 180  Q
    |||||||||| ||||||||||||    
T  10128482 cactaattcaggacatatttcaa 10128460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 25550217 - 25550091
Alignment:
Q  1 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 99  Q
    ||||||||||||||||||||||||||||| ||||||| | |||||||  |||| ||| |||| ||| || || |||||||| | |||||| |||||||||    
T  25550217 taatcgataattacagatactgaatagtaaaggtaactccagctataggaaaatccactaactattagtccaagaaatact-acacacaagacttttatt 25550119  T
Q  100 tatatggcaaaatctttgcatatttctt 127  Q
    |||||||| |||||||| ||||||||||    
T  25550118 tatatggccaaatctttacatatttctt 25550091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 15140769 - 15140727
Alignment:
Q  138 gatgtgggacatttttccaacactaattcaagacatatttcaa 180  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15140769 gatgtgggacatttttccaacactaattcaagacatatttcaa 15140727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37965269 - 37965323
Alignment:
Q  1 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacc 55  Q
    |||||||||||||||||||||||||||||||||||||| || ||||| |||||||    
T  37965269 taatcgataattacagatactgaatagtagaggtaacgttacctatagcaaaacc 37965323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 15140856 - 15140779
Alignment:
Q  91 acttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaa 168  Q
    ||||||||||||||| | |||||||| ||||||||||| | ||| ||||||||||||||  | |||||||||||||||    
T  15140856 acttttatttatatgaccaaatctttacatatttcttcattttaaccgatgtgggacataatcccaacactaattcaa 15140779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 30046558 - 30046377
Alignment:
Q  1 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatt 99  Q
    |||||||||||| || ||| ||||||||||||||||||||||||||| ||||||| | |||| ||| || || |||||||||| ||||||| ||||||||    
T  30046558 taatcgataattgcatatattgaatagtagaggtaacgctagctatagcaaaaccgactaactatt-gtacaagaaatactaacacacaaagcttttatt 30046460  T
Q  100 tatatggcaaaatctttgcata--tttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 180  Q
    |||||||  || ||||||||||  ||| ||| ||||||||||| || |||||||| |||||| ||||||||| ||||||||||    
T  30046459 tatatggtcaagtctttgcatattttttttcatattatccgatatgagacattttcccaacattaattcaaggcatatttcaa 30046377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 25889763 - 25889611
Alignment:
Q  1 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 99  Q
    |||| |||||||||| | ||| |||| ||||||||  |||||||||| ||||||||| |||| ||||||||| |||||||||| | |||| |||||||||    
T  25889763 taattgataattacaaagactaaataatagaggtactgctagctatagcaaaacccactaactattggtgcaagaaatactaacatacaagacttttatt 25889664  T
Q  100 tatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttt 152  Q
    |||||| | ||| |||||||||  ||||| | |||||||||||||||||||||    
T  25889663 tatatgaccaaacctttgcataactcttcatgttatccgatgtgggacatttt 25889611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 31141480 - 31141363
Alignment:
Q  64 attggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacacta 162  Q
    ||||||| | |||||||||| || ||| ||||||||||||||||| |||||||||||||||||||| |||| || |||||| ||| |||||| |||| ||    
T  31141480 attggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctattctctgatgtgagacttttttctaacaata 31141381  T
Q  163 attcaagacatatttcaa 180  Q
     || |||  |||||||||    
T  31141380 ttttaagttatatttcaa 31141363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 25578999 - 25579036
Alignment:
Q  113 ctttgcatatttcttcgtattatccgatgtgggacatt 150  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  25578999 ctttgcatatttcttcatattatccgatgtgagacatt 25579036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 37133784 - 37133896
Alignment:
Q  24 atagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatat 122  Q
    ||||||||| ||||  ||| |||| |||||  || |||| |||| || | ||||||||||||||||| ||||||||| ||| ||| ||||||| | ||||    
T  37133784 atagtagagttaacattagttatagcaaaattcactaactattgatgtaagaaatactaatacacaagacttttattcatacggctaaatcttcgtatat 37133883  T
Q  123 ttcttcgtattat 135  Q
    || ||| ||||||    
T  37133884 tttttcatattat 37133896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 7961911 - 7961767
Alignment:
Q  6 gataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatat 104  Q
    |||||||||| ||  ||||||||||| |||| |||||||||| ||||||||| |||| ||||||||| |||||||||| ||||||  |||||||||||||    
T  7961911 gataattacaaattttgaatagtagaagtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatat 7961812  T
Q  105 ggcaaaatctttgcatatttcttcgtattatccgatgtgggacat 149  Q
    | | ||| |||||||||||||||| |||||| |||||||||||||    
T  7961811 gaccaaacctttgcatatttcttcatattatgcgatgtgggacat 7961767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 11270096 - 11269944
Alignment:
Q  1 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 99  Q
    |||| |||||||||| ||||||||||||||||||||| |||| |||| ||||||||| |||| |||||||||   |||||||| ||||||  ||||||||    
T  11270096 taattgataattacaaatactgaatagtagaggtaacactagttatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatt 11269997  T
Q  100 tatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttt 152  Q
    |||||| | |||  |||  |||||||||| |||||||||||||||||||||||    
T  11269996 tatatgaccaaacttttttatatttcttcatattatccgatgtgggacatttt 11269944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 1103205 - 1103129
Alignment:
Q  92 cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaa 168  Q
    |||||||||||||||| || ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  1103205 cttttatttatatggccaagtctttacatatttcttcatattatccgatgtgggacgtttttccaacactaattcaa 1103129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 36208078 - 36207996
Alignment:
Q  6 gataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacac 88  Q
    |||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||| |||||||||| ||||    
T  36208078 gataattagagatactaaatagtagagctaacgctagctatagcaaaacccactaactattggtgcaagaaatactaacacac 36207996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 1716635 - 1716787
Alignment:
Q  17 atactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctt 115  Q
    ||||||||||||||||||||  | |||||||| ||||| || |||| |||| |||| |||||| ||| |||||| || |||||||||||||  || ||||    
T  1716635 atactgaatagtagaggtaataccagctataaaaaaactcactaactattgatgcaagaaatattaacacacaagacctttatttatatggtcaagtctt 1716734  T
Q  116 tgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaa 168  Q
    | ||||||| ||| |||| | ||||||| ||  |||||||||||||| |||||    
T  1716735 tacatattttttcatattcttcgatgtgagaattttttccaacactatttcaa 1716787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 1345129 - 1345068
Alignment:
Q  118 catatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 180  Q
    ||||||||||| |||| | ||||||| ||| |||||| |||||||||||||||||||||||||    
T  1345129 catatttcttcttattcttcgatgtgagac-tttttctaacactaattcaagacatatttcaa 1345068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 1103127 - 1103078
Alignment:
Q  130 tattatccgatgtgggacatttttccaacactaattcaagacatatttca 179  Q
    ||||||| |||||| |||||||| |||||||||||||||| |||||||||    
T  1103127 tattatcagatgtgagacattttcccaacactaattcaaggcatatttca 1103078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 11269802 - 11269846
Alignment:
Q  10 attacagatactgaatagtagaggtaacgctagctataacaaaac 54  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||    
T  11269802 attacagatactaactagtagaggtaacgctagctatagcaaaac 11269846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 11280396 - 11280342
Alignment:
Q  16 gatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtg 70  Q
    |||||||  ||||||||||||||||||||||| ||||||| | |||| |||||||    
T  11280396 gatactgtctagtagaggtaacgctagctatagcaaaacctactaactattggtg 11280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 22827037 - 22827166
Alignment:
Q  21 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgca 119  Q
    ||||||||||| |||| |||||||||||||||||||| |||| ||||||||| ||||||  || ||||||  |||||||||||||| | ||| |||||||    
T  22827037 tgaatagtagaagtaatgctagctataacaaaacccactaactattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgca 22827136  T
Q  120 tatttcttcgtattatccgatgtgggacat 149  Q
    ||||||||| ||||||||||||||||||||    
T  22827137 tatttcttcatattatccgatgtgggacat 22827166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 22841088 - 22840959
Alignment:
Q  21 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgca 119  Q
    ||||||||||| |||| ||||||||||  |||||||| |||| ||||||||| |||||||||| ||||||  ||||||||| |||| | ||  |||||||    
T  22841088 tgaatagtagaagtaatgctagctatagtaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgca 22840989  T
Q  120 tatttcttcgtattatccgatgtgggacat 149  Q
    ||||||||| ||||||||||||||||||||    
T  22840988 tatttcttcatattatccgatgtgggacat 22840959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 24284954 - 24284782
Alignment:
Q  9 aattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggc 107  Q
    ||||||||||||| |||||||||| |||  | |||||||  || | ||| | || ||||||||| |||||| ||| ||||||  | ||||||||||| ||    
T  24284954 aattacagatactaaatagtagagctaataccagctatagtaacatccactgactattggtgcaagaaatattaacacacaatgcctttatttatatagc 24284855  T
Q  108 aaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 180  Q
     |||| ||||||||||| ||| |||| || |||||||||| |||| |||| | ||||||||| ||||||||||    
T  24284854 caaatatttgcatatttgttcatattctctgatgtgggactttttcccaatattaattcaaggcatatttcaa 24284782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 20260944 - 20261024
Alignment:
Q  10 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa 90  Q
    |||||| |||||||||||||||||||||||||| |||| |||||  ||||| | |||| |||| |||||||||||||||||    
T  20260944 attacatatactgaatagtagaggtaacgctagttatagcaaaattcattagctattgatgcaagaaatactaatacacaa 20261024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 180
Target Start/End: Complemental strand, 24272846 - 24272707
Alignment:
Q  41 agctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccga 139  Q
    |||||||  ||||| || |||| ||||||||| |||||||||| ||||||  | ||||| ||||| |  || ||||||||||||||||| || | | |||    
T  24272846 agctatagtaaaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcatactctacga 24272747  T
Q  140 tgtgggacatttttccaacactaattcaagacatatttcaa 180  Q
    |||| ||  ||||||||||||||||||||||||||||||||    
T  24272746 tgtgagat-tttttccaacactaattcaagacatatttcaa 24272707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 22826642 - 22826727
Alignment:
Q  21 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatg 105  Q
    ||||||||||| |||| |||||||||| ||||| ||| |||| ||||||||| |||||||||| ||| ||  ||||||||||||||    
T  22826642 tgaatagtagaagtaatgctagctatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatg 22826727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 14721838 - 14721668
Alignment:
Q  10 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggca 108  Q
    ||||||||||| |||||||| ||||||    || ||||||||||||||||||| |||| |||| |||||||| ||| ||||  |||||||||||| |||     
T  14721838 attacagataccgaatagtataggtaatatcagatataacaaaacccattaactattgctgcaagaaatacttataaacaaggcttttatttata-ggcc 14721740  T
Q  109 aaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 180  Q
    |||||||||||||||||||  |||| |||||||||||||||||| |||||| ||||||| | ||||| ||||    
T  14721739 aaatctttgcatatttctttctattctccgatgtgggacattttcccaacattaattcatggcatatgtcaa 14721668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 13557985 - 13558114
Alignment:
Q  21 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgca 119  Q
    ||||||||||| |||| |||||| ||| ||||| ||| |||| |||||||||||||||||||| ||||||  |||||||||||||| | ||  |||||||    
T  13557985 tgaatagtagaagtaatgctagcaatagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttgca 13558084  T
Q  120 tatttcttcgtattatccgatgtgggacat 149  Q
    ||||||||| ||||||||||||||||||||    
T  13558085 tatttcttcatattatccgatgtgggacat 13558114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 2921839 - 2921981
Alignment:
Q  8 taattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatgg 106  Q
    |||||||| ||  |||||| |||| |||| |||||||||| ||||||||| |||| ||||||||| |||||||||| ||| || ||||||||||||||      
T  2921839 taattacaaattttgaatattagacgtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatatta 2921938  T
Q  107 caaaatctttgcatatttcttcgtattatccgatgtgggacat 149  Q
    | || || |||||||||||||| |||||||||||||| |||||    
T  2921939 ccaagtcattgcatatttcttcatattatccgatgtgagacat 2921981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 27340600 - 27340743
Alignment:
Q  6 gataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaacttttatttatatg 105  Q
    |||||||||| ||  ||||||||||| |||| ||||| |||| ||||||||| |||| |||||| || || ||||||| |||||   |||||||||||||    
T  27340600 gataattacaaattttgaatagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt-ttttatttatatg 27340698  T
Q  106 gcaaaatctttgcatatttcttcgtattatccgatgtgggacatt 150  Q
     | ||  |||||||||||||||| |||||||||||||||||||||    
T  27340699 accaagcctttgcatatttcttcatattatccgatgtgggacatt 27340743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 27401340 - 27401483
Alignment:
Q  6 gataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaacttttatttatatg 105  Q
    |||||||||| ||  ||||||||||| |||| ||||| |||| ||||||||| |||| |||||| || || ||||||| |||||   |||||||||||||    
T  27401340 gataattacaaattttgaatagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt-ttttatttatatg 27401438  T
Q  106 gcaaaatctttgcatatttcttcgtattatccgatgtgggacatt 150  Q
     | ||  |||||||||||||||| |||||||||||||||||||||    
T  27401439 accaagcctttgcatatttcttcatattatccgatgtgggacatt 27401483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 16910087 - 16910225
Alignment:
Q  1 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 99  Q
    ||||||||||||||||||||||||||||| | || |||||||||||| |||||| ||  ||| ||||| |||  ||||||||| |||||| |||||||||    
T  16910087 taatcgataattacagatactgaatagtaaatgt-acgctagctatagcaaaacacacaaactattggcgcaacaaatactaacacacaatacttttatt 16910185  T
Q  100 tatatggcaaaatctttgcatatttcttcgtattatccga 139  Q
    ||||  || || |||||||||||| |||| ||||||||||    
T  16910186 tataatgccaagtctttgcatattccttcatattatccga 16910225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 13555994 - 13556119
Alignment:
Q  1 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 99  Q
    |||| |||||||||| ||  ||||||||||| |||| |||||||||| ||||||||| |||| ||||||||| |||||||||| ||||||  ||||||||    
T  13555994 taattgataattacaaattttgaatagtagaagtaatgctagctatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatt 13556093  T
Q  100 tatatggcaaaatctttgcatatttc 125  Q
    |||||| | ||  |||||||||||||    
T  13556094 tatatgaccaagcctttgcatatttc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 11678966 - 11678827
Alignment:
Q  10 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggca 108  Q
    |||||| |||||||||||||||||||| |||| ||||| ||||| ||| ||    ||||||   |||||||||| |||||| | ||||||||| ||| |     
T  11678966 attacaaatactgaatagtagaggtaatgctaactatagcaaaatccacta----ttggtgttagaaatactaacacacaagagttttatttacatgacc 11678871  T
Q  109 aaatctttgcatatttcttcgtattatccgatgtgggacatttt 152  Q
    ||  |||||||||||||||| |||||||||||||||||||||||    
T  11678870 aagcctttgcatatttcttcatattatccgatgtgggacatttt 11678827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 2923168 - 2923295
Alignment:
Q  21 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatcttt-gc 118  Q
    ||||||||||| ||||   |||||||||||| ||||| |||| ||| ||||| ||| |||||| |||||| ||||||||||||||| | ||  |||| ||    
T  2923168 tgaatagtagaagtaatattagctataacaagacccactaactattagtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttgc 2923267  T
Q  119 atatttcttcgtattatccgatgtggga 146  Q
    |||||||||| |||||||||||||||||    
T  2923268 atatttcttcatattatccgatgtggga 2923295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 11677240 - 11677133
Alignment:
Q  22 gaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcat 120  Q
    ||||||||||||||| ||||||||||  |||||||  |||| |||||||   |||||||||| |||||| | |||||||||||||   ||  ||||||||    
T  11677240 gaatagtagaggtaatgctagctataggaaaacccgctaactattggtgttagaaatactaacacacaagagttttatttatatgatcaatcctttgcat 11677141  T
Q  121 atttcttc 128  Q
    ||||||||    
T  11677140 atttcttc 11677133  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 22880002 - 22880128
Alignment:
Q  44 tataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgt 142  Q
    |||| ||||||||| |||  ||||||||| |||||| ||| ||||||| | |||||||||||| | || | |||  |||||||||  |||| || | |||    
T  22880002 tatagcaaaacccactaattattggtgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgt 22880101  T
Q  143 gggacatttttccaacactaattcaag 169  Q
    | ||| |||||||||||||||||||||    
T  22880102 gtgacttttttccaacactaattcaag 22880128  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 22898117 - 22898243
Alignment:
Q  44 tataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgt 142  Q
    |||| ||||||||| |||  ||||||||| |||||| ||| ||| ||| | |||||||||||| | || | |||  |||||||||  |||| || | |||    
T  22898117 tatagcaaaacccactaattattggtgcaagaaatattaacacaaaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgt 22898216  T
Q  143 gggacatttttccaacactaattcaag 169  Q
    | ||| |||||||||||||||||||||    
T  22898217 gtgacttttttccaacactaattcaag 22898243  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 19670793 - 19670657
Alignment:
Q  17 atactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctt 115  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| |||||| || | |||||||| ||||||  |||||||||||||| | ||  |||    
T  19670793 atactgaatagtagaggtaacgctagctatagcaaaacccactaactattggtacaagtaatactaacacacaaggcttttatttatatgactaagcctt 19670694  T
Q  116 tgcatatttcttcgtattatccgatgtgggacatttt 152  Q
    ||||||||||||| |||||||  ||||| ||||||||    
T  19670693 tgcatatttcttcatattatcttatgtgagacatttt 19670657  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 32795543 - 32795672
Alignment:
Q  24 atagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatat 122  Q
    ||||||||||||||| ||| |||| ||||||||| |||| |||||| || | |||||| | || ||| ||||||||| ||||| | || |||||||||||    
T  32795543 atagtagaggtaacgttagttatagcaaaacccactaactattggtacaagtaatactgacacgcaagacttttattaatatgactaagtctttgcatat 32795642  T
Q  123 ttcttcgtattatccgatgtgggacatttt 152  Q
    |||||| |||||||||||||||||||||||    
T  32795643 ttcttcatattatccgatgtgggacatttt 32795672  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 26896681 - 26896586
Alignment:
Q  39 ctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaact-tttatttatatggcaaaatctttgcatatttcttcgtatt 133  Q
    ||||||||| |||||| ||||||| |||  |||| |||||||||| ||||||  | |||||||||||||| || ||||||||||||||||| ||||    
T  26896681 ctagctatagcaaaacacattaactattaatgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctatt 26896586  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 32796359 - 32796436
Alignment:
Q  76 aatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttt 152  Q
    |||||||| ||||||  |||||||||||||| | ||  |||||||||||||||| ||||||||||| |||||||||||    
T  32796359 aatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatccgatctgggacatttt 32796436  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 33897307 - 33897182
Alignment:
Q  43 ctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatatttcttcgtattatccgatg 141  Q
    ||||||||||||| | |||  ||||||| |  ||||||||| |||||| |||||||||||||| |  |||||||| ||||||||||| ||||||  |||     
T  33897307 ctataacaaaacctactaattattggtgtaaaaaatactaacacacaagacttttatttatattgtcaaatctttacatatttcttcctattatatgata 33897208  T
Q  142 tgggacatttttccaacactaattca 167  Q
    | ||||||||| ||||||||||||||    
T  33897207 ttggacattttcccaacactaattca 33897182  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 42001987 - 42001905
Alignment:
Q  21 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttat 102  Q
    ||||||||||| |||| |||| ||||| ||||||| | |||| ||||||||| | | |||||| |||||| ||||||||||||    
T  42001987 tgaatagtagaagtaatgctacctatagcaaaacctactaactattggtgcaagtattactaacacacaagacttttatttat 42001905  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 260473 - 260530
Alignment:
Q  123 ttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 180  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||| |||||||||||    
T  260473 ttcttcgtattaccctatgtaggacattttcccaacactaattcaaaacatatttcaa 260530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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