View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8318_low_2 (Length: 651)
Name: NF8318_low_2
Description: NF8318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8318_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Complemental strand, 55737278 - 55736647
Alignment:
| Q |
1 |
aaagcatacaagaaaaacaatcgctaccggaaaagcaaagaagaaccatgtgttgaaacttattggttttgcaccaggaacaagactcttccacattcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55737278 |
aaagcatacaagaaaaacaatcgctaccggaaaagcaaagaagaaccatgtgttgaaacttattggttttgcaccaggaacaagactcttccacattcca |
55737179 |
T |
|
| Q |
101 |
atcaatatcaaatttacacctgtccctgtcaaagtgctcattcctccaattggaaccgcataaaccactgtcagaaccaccgctctgctgaacttattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55737178 |
atcaatatcaaatttacacctgtccctgtcaaagtgctcattcctccaattggaaccgcataaaccactgtcagaaccaccgctctgctgaacttattca |
55737079 |
T |
|
| Q |
201 |
ccaactccgattgctctgacggtggtggcagccgctgtagcagccctgtggccaccggcatcaacatcacggcagctgccacgttgtgcatccacatact |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55737078 |
ccaactccgattgctctgacggtggtggcagcctctgtagcagccctgtggccaccggcatcaacatcacggcagctgccacgttgtgcatccacatact |
55736979 |
T |
|
| Q |
301 |
cacaaagaatgacgtgccacatagacccaataacaatagcgctggattcaacggttccccacaaaacactgatgtcaccttcaaacatcatatcattcac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55736978 |
cacaaagaatgacgtgccacatagacccaataacaatagcgctggattcaacggttccccacaaaacactgatgtcaccttcaaacatcatatcattcac |
55736879 |
T |
|
| Q |
401 |
aaccaattataaaccttggtcggaaatatatatcattttcagttcacaataatcaaatttaaatgactcgttttttccacctcacagaatnnnnnnngaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
55736878 |
aaccaattataaaccttggtcggaaatatatatcattttcagttcacaataatcaaatttaaatgactcgttttttccacctcacaaaataaaaaaagaa |
55736779 |
T |
|
| Q |
501 |
tttaaccgtggtaggttcactgtccaaaacagttttgtacacacaatctatcaacccaccactattaaactcataaataaactctgtcattctaatcatt |
600 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55736778 |
tttaaccgtggtgggttcacggtccaaaacagttttgtacacacaatcgatcaacccaccactattaaactcataaataaactctgtcattctaatcatt |
55736679 |
T |
|
| Q |
601 |
caaaaatatataatcatgtatacccatccaag |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
55736678 |
caaaaatatataatcatgtatacccatccaag |
55736647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 36 - 200
Target Start/End: Complemental strand, 9378713 - 9378549
Alignment:
| Q |
36 |
caaagaagaaccatgtgttgaaacttattggttttgcaccaggaacaagactcttccacattccaatcaatatcaaatttacacctgtccctgtcaaagt |
135 |
Q |
| |
|
||||||| ||||| | ||||| |||||||||||||| |||| |||| || |||||||||||||| | |||||| || |||||||| ||||| | ||| |
|
|
| T |
9378713 |
caaagaaaaaccaagaattgaagcttattggttttgcttcaggggcaaggcttttccacattccaattattatcaagttcacacctgttcctgttagagt |
9378614 |
T |
|
| Q |
136 |
gctcattcctccaattggaaccgcataaaccactgtcagaaccaccgctctgctgaacttattca |
200 |
Q |
| |
|
||| || ||||||||||| ||||| |||||||| |||| ||| ||||| |||||||| |||| |
|
|
| T |
9378613 |
gcttatccctccaattggtgtagcatacaccactgttagaatcactgctctactgaacttgttca |
9378549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University