View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8318_low_5 (Length: 455)
Name: NF8318_low_5
Description: NF8318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8318_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 28233102 - 28233528
Alignment:
| Q |
18 |
gtaatgaggtattaatgatctcttaggctataaatatgcacgtactagacttgttcgatcaccttcttcacttgtaaaactccaaaaactcattctatat |
117 |
Q |
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| T |
28233102 |
gtaatgaggtattaatgatctcttaggctataaatatgcatgtactagacttgttcgatcaccttc---acttgtaaaactccaaaaactcattctatat |
28233198 |
T |
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| Q |
118 |
gcattttgggtgaattgctactccatatttccattccatcaagattctttttatttgctttattttattgattatgtaaatcatttgatcatgagtgagt |
217 |
Q |
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| T |
28233199 |
gcattttgggtgaattgctactccatatttccattccatcaagattttttttatttgctttattttattgattatgtatctcatttgatcatgagtgagt |
28233298 |
T |
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| Q |
218 |
agtctcttgtaatttcgggggtttgggaaaaatccaacgacttaatcttcctaaactcata-atcttgtatcttttgtgagatttaattttcgatctaat |
316 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
28233299 |
agtctcttgtagtttcgggggtttgggaaaaatccaacgacttaatcttcctaaactcatatatcttgtatcttttgtgagatttaatttccgatctaat |
28233398 |
T |
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| Q |
317 |
tttggtttgtcataaattaaggatatgagcaattgatttacttaatttagatgttggatcgataaatgaaaatgaagatccaatgtccgatctacaagat |
416 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28233399 |
tttgatttgtcataaattaaggatatgagcaattgatttacttaatttagatgttggatcgataaatgaaaatgaagatccaatgtccgatctacaagat |
28233498 |
T |
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| Q |
417 |
tgttcaaaagaatcgacatatgagaataat |
446 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28233499 |
tgttcaaaagaatcgacatatgagaataat |
28233528 |
T |
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