View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8318_low_6 (Length: 451)
Name: NF8318_low_6
Description: NF8318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8318_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 83 - 340
Target Start/End: Original strand, 30635591 - 30635848
Alignment:
| Q |
83 |
gagagcaagggaattgttgactaaagtaaataatataagatttttatattctagcctctgattcattgcatttttaaataaaaaatgtgtcatgcataat |
182 |
Q |
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| T |
30635591 |
gagagcaagggaattgttgactaaagtaaataatataagatttctatattctagcctctgattcattgtatttttaaataaaaaatgtgtcatgcataat |
30635690 |
T |
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| Q |
183 |
gcatgtgttcgactgcaactagtttgattttgaaattaatattctcctgagtctagtatgatcttgattaattgctattcagatcaaagtttcctagnnn |
282 |
Q |
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| T |
30635691 |
gcatgtgttcgactgcaactagtttgattttgaaattaatattctcctgagtctagtatgatcttgattaattgctgttcagatcaaagtttcctagttt |
30635790 |
T |
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| Q |
283 |
nnnnnagagaaagaaagttataaaaataataatggtgttcatcaaattactaaggcag |
340 |
Q |
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| T |
30635791 |
tttttagagaaagaaagttataaaaataataatggtgttcatcaaattactaaggcag |
30635848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 438
Target Start/End: Original strand, 30635919 - 30635947
Alignment:
| Q |
410 |
gtttgagtcatatttctccaactccaaac |
438 |
Q |
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| T |
30635919 |
gtttgagtcatatttctccaactccaaac |
30635947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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