View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8318_low_8 (Length: 324)
Name: NF8318_low_8
Description: NF8318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8318_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 16978344 - 16978043
Alignment:
| Q |
15 |
acaatcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgc |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16978344 |
acaatcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgc |
16978245 |
T |
|
| Q |
115 |
agccttggtgtagacaatcctccttttggaaatgattcaaatttaggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16978244 |
agccttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaa |
16978145 |
T |
|
| Q |
215 |
tcatttcaaaactaccacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtc |
314 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16978144 |
tcatttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtc |
16978045 |
T |
|
| Q |
315 |
ca |
316 |
Q |
| |
|
|| |
|
|
| T |
16978044 |
ca |
16978043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 17030216 - 17029915
Alignment:
| Q |
15 |
acaatcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgc |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17030216 |
acaattatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgc |
17030117 |
T |
|
| Q |
115 |
agccttggtgtagacaatcctccttttggaaatgattcaaatttaggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17030116 |
agccttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaa |
17030017 |
T |
|
| Q |
215 |
tcatttcaaaactaccacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtc |
314 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17030016 |
tcatttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtc |
17029917 |
T |
|
| Q |
315 |
ca |
316 |
Q |
| |
|
|| |
|
|
| T |
17029916 |
ca |
17029915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 17048554 - 17048253
Alignment:
| Q |
15 |
acaatcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgc |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17048554 |
acaattatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgc |
17048455 |
T |
|
| Q |
115 |
agccttggtgtagacaatcctccttttggaaatgattcaaatttaggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
17048454 |
agccttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaa |
17048355 |
T |
|
| Q |
215 |
tcatttcaaaactaccacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtc |
314 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17048354 |
tcatttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtc |
17048255 |
T |
|
| Q |
315 |
ca |
316 |
Q |
| |
|
|| |
|
|
| T |
17048254 |
ca |
17048253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 17109676 - 17109390
Alignment:
| Q |
15 |
acaatcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgc |
114 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||| | ||| ||||| |||| || ||| || || |
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|
| T |
17109676 |
acaatcatttatagacagcttatagagagatggaaggaggatatgcatgcattcaggaagtgattttaactcctctaattttgaaagataaaactgctga |
17109577 |
T |
|
| Q |
115 |
agccttggtgtagacaatcctccttttggaaatgattcaaatttaggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaa |
214 |
Q |
| |
|
||||| |||| |||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
17109576 |
agcctgggtgcagacaatcctccatttggaaatgatgcaaatttaggacactcttcaattaagagagatgtgagtttaagatgttcattttcctgtgaaa |
17109477 |
T |
|
| Q |
215 |
tcatttcaaaactaccacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagc |
301 |
Q |
| |
|
||||||| ||| || ||||||||||| || ||| |||||||| |||||||| || || ||||| || ||||||||||| |||| |
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|
| T |
17109476 |
tcatttcgaaattaatacacttataaacatcaagagtgtcaagattcgggaacagtttgagagggaaggtcgttagagagtcacagc |
17109390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 17024547 - 17024305
Alignment:
| Q |
24 |
tatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgatttta-----aattctccaatttggaaatatcaaagtgttgcagcc |
118 |
Q |
| |
|
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||| | | |
|
|
| T |
17024547 |
tatagataggttatgaagagatggaaagaagatatgcatgcatttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaac |
17024448 |
T |
|
| Q |
119 |
ttggtgtagacaatcctccttttggaaatgattcaaatttaggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaatcat |
218 |
Q |
| |
|
|||| | |||| ||||| | || || |||| | |||| | |||||||| | |||||||||| | | ||| ||||||| |||||||||| ||| |||| |
|
|
| T |
17024447 |
ttggagcagacgatccttccttgggtaatgttccaaaataaggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcat |
17024348 |
T |
|
| Q |
219 |
ttcaaaactaccacacttataaaggtcgagaaaatcaagattt |
261 |
Q |
| |
|
||||||| || | ||||||||| | ||||| ||||||||||| |
|
|
| T |
17024347 |
ttcaaaattattaaacttataaacgccgagataatcaagattt |
17024305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 17089819 - 17089577
Alignment:
| Q |
24 |
tatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgatttta-----aattctccaatttggaaatatcaaagtgttgcagcc |
118 |
Q |
| |
|
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||| | |
|
|
| T |
17089819 |
tatagataggttatgaagagatggaaagaagatatgcatgcatttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaat |
17089720 |
T |
|
| Q |
119 |
ttggtgtagacaatcctccttttggaaatgattcaaatttaggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaatcat |
218 |
Q |
| |
|
|||| | |||| ||||| | || || |||| | |||| | |||||||| | |||||||||| | | ||| ||||||| |||||||||| ||| |||| |
|
|
| T |
17089719 |
ttggagcagacgatccttccttgggtaatgttccaaaataaggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcat |
17089620 |
T |
|
| Q |
219 |
ttcaaaactaccacacttataaaggtcgagaaaatcaagattt |
261 |
Q |
| |
|
||||||| || | ||||||||| | ||||| ||||||||||| |
|
|
| T |
17089619 |
ttcaaaattattaaacttataaacgccgagataatcaagattt |
17089577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 256
Target Start/End: Complemental strand, 17035309 - 17035072
Alignment:
| Q |
24 |
tatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgatttta-----aattctccaatttggaaatatcaaagtgttgcagcc |
118 |
Q |
| |
|
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||| | | |
|
|
| T |
17035309 |
tatagataggttatgaagagatggaaagaagatatgcatgcatttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaac |
17035210 |
T |
|
| Q |
119 |
ttggtgtagacaatcctccttttggaaatgattcaaatttaggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaatcat |
218 |
Q |
| |
|
|||| | |||| ||||| | || || |||| | |||| | |||||||| | |||||||||| | | ||| ||||||| |||||||||| ||| |||| |
|
|
| T |
17035209 |
ttggagcagacgatccttccttgggtaatgttccaaaataaggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcat |
17035110 |
T |
|
| Q |
219 |
ttcaaaactaccacacttataaaggtcgagaaaatcaa |
256 |
Q |
| |
|
||||||| || | ||||||||| | ||||| |||||| |
|
|
| T |
17035109 |
ttcaaaattattaaacttataaacgccgagataatcaa |
17035072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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