View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_high_10 (Length: 366)
Name: NF8319A_high_10
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 38447754 - 38448069
Alignment:
| Q |
19 |
acatcagatgtcagagataaataactggaagaaggcaattgctttggaggaaggtgttgatgaaaaccagatcattttctttgagaattacttatacggt |
118 |
Q |
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| T |
38447754 |
acatcagatgtcagagataaataactggaagaaggcaattgctttggaggaaggtgttgatgaaaaccagatcattttctttgaggattacttatacggt |
38447853 |
T |
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| Q |
119 |
tatttggtttgactatgagttatccagatcttttgtttgacacaatgatgccattagacacctgcatggcattcattctaccacaaaatgtatcatgaat |
218 |
Q |
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| T |
38447854 |
tatttggtttgactatgagttatc------------ttgacacaatgatgccattagacacctgcatggcattcattctaccacaaaatgtatcacgaat |
38447941 |
T |
|
| Q |
219 |
gttttgtctaaacaaccttatttgatagatcaatttaatgtattctactgcctgtatatgtttcagagcttctataagagtatcttttttgttaag--ta |
316 |
Q |
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| T |
38447942 |
gttttgtctaaacaaccttatttgatatatcaatttaatgtattctactgtcagcatatgtttcagagcttctataagagtatattttttcttgagtata |
38448041 |
T |
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| Q |
317 |
tctcttggtcctcttatacatttgtttc |
344 |
Q |
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| T |
38448042 |
tatattgctcctcttatacatttgtttc |
38448069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 38550515 - 38550200
Alignment:
| Q |
19 |
acatcagatgtcagagataaataactggaagaaggcaattgctttggaggaaggtgttgatgaaaaccagatcattttctttgagaattacttatacggt |
118 |
Q |
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| T |
38550515 |
acatcagatgtcagagataaataactggaagaaggcaattgctttggaggaaggtgttgatgaaaaccagatcattttctttgaggattacttatacggt |
38550416 |
T |
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| Q |
119 |
tatttggtttgactatgagttatccagatcttttgtttgacacaatgatgccattagacacctgcatggcattcattctaccacaaaatgtatcatgaat |
218 |
Q |
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| T |
38550415 |
tatttggtttgactatgagttatc------------ttgacacaatgatgccattagacacctgcatggcattcattctaccacaaaatgtatcacgaat |
38550328 |
T |
|
| Q |
219 |
gttttgtctaaacaaccttatttgatagatcaatttaatgtattctactgcctgtatatgtttcagagcttctataagagtatcttttttgttaag--ta |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| | | |||||||||||||||||||||||||||| |||||| || || || |
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| T |
38550327 |
gttttgtctaaacaaccttatttgatatatcaatttaatgtattctactgtcagcatatgtttcagagcttctataagagtatattttttcttgagtata |
38550228 |
T |
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| Q |
317 |
tctcttggtcctcttatacatttgtttc |
344 |
Q |
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| T |
38550227 |
tatattgctcctcttatacatttgtttc |
38550200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 207 - 346
Target Start/End: Complemental strand, 55780778 - 55780639
Alignment:
| Q |
207 |
tgtatcatgaatgttttgtctaaacaaccttatttgatagatcaatttaatgtattctactgcctgtatatgtttcagagcttctataagagtatctttt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| |
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| T |
55780778 |
tgtatcatgaatgttttgtctaaacaaccttatttgatagatcaatttaatgtattctactgtcagcatatgtttcagagcttctataagagtatctttt |
55780679 |
T |
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| Q |
307 |
ttgttaagtatctcttggtcctcttatacatttgtttctg |
346 |
Q |
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| T |
55780678 |
ttgttaagtatctcttggtcctcttatacatttgtttctg |
55780639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 207 - 346
Target Start/End: Complemental strand, 55844958 - 55844819
Alignment:
| Q |
207 |
tgtatcatgaatgttttgtctaaacaaccttatttgatagatcaatttaatgtattctactgcctgtatatgtttcagagcttctataagagtatctttt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| |
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| T |
55844958 |
tgtatcatgaatgttttgtctaaacaaccttatttgatagatcaatttaatgtattctactgtcagcatatgtttcagagcttctataagagtatctttt |
55844859 |
T |
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| Q |
307 |
ttgttaagtatctcttggtcctcttatacatttgtttctg |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
55844858 |
ttgttaagtatctcttggtcctcttatacatttgtttctg |
55844819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 38448347 - 38448399
Alignment:
| Q |
140 |
atccagatcttttgtttgacacaatgatgccattagacacctgcatggcattc |
192 |
Q |
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| T |
38448347 |
atccagatcttttgttcaacacaacgatgtcattagaaacctacatggcattc |
38448399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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