View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_high_15 (Length: 322)
Name: NF8319A_high_15
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 28 - 308
Target Start/End: Original strand, 55396294 - 55396574
Alignment:
| Q |
28 |
gtcatcaccgaactcgcaagacaatgatagtaattgtgtgagtggagattccatacgggaaagatttcttagtttttatgcttcccgtggtcacaaggtc |
127 |
Q |
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| T |
55396294 |
gtcatcaccgaactcgcaagacaatgatagtaattgtgtgagtggagattccatacgggaaagatttcttagtttttatgcttcccgtggtcacaaggtc |
55396393 |
T |
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| Q |
128 |
cttcccagtgcttctctcgttccagatgaccctactgttctcctcaccattgctggtatgcttcaattcaaacctatctttcttggaaaacttcctagac |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55396394 |
cttcccagtgcttctctcgttccagatgaccctactgttctcctcaccattgctggtatgcttcaattcaaacctatctttcttggaaaacttcctagac |
55396493 |
T |
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| Q |
228 |
aagtccctcgtgctactacttcacaacgctgcatccgtactaatgatatcaacaatgttggtcatacctcacgacatcata |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55396494 |
aagtccctcgtgctactacttcacaacgctgcatccgtactaatgatatcaacaatgttggtcatacctcacgacatcata |
55396574 |
T |
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