View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_high_7 (Length: 430)
Name: NF8319A_high_7
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 25633767 - 25633365
Alignment:
| Q |
1 |
gccgaggaggcacaaacagttcagaatcaatttgctgcattaaattacatggaaaagccaaaggaaaactaagtccacatcaacaattggagtgttataa |
100 |
Q |
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| T |
25633767 |
gccgaggaggcacaaacagttcagaatcaatttgctgcattaaattacatggaaaaaccaaaggaaaactaagtccacattaacaattggagtgttat-- |
25633670 |
T |
|
| Q |
101 |
taattgggaatgttattaaacacagtgagacacataaactaaaaacattaaagaattaataaacaaatatctaaatttcagaatcaattaattatatcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25633669 |
----------------taaacacagtgagacacataaactaaaaacattaaagaattaataaacaaatatctaaatttcagaatcaattaattatatcca |
25633586 |
T |
|
| Q |
201 |
gaatatattattagatgataaagataaagaagtcggtaacatta-ttgttaatcattacttgcagcctaagcaactagatctaagagtgcttagctacac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25633585 |
gaatatattattagatgataaagataaagaagtcggtaacattagttgttaatcattacttgcagcctaagcaactagatctaagagtacttagctacac |
25633486 |
T |
|
| Q |
300 |
tatagcatatgatagcttaattaatgtacacaaacatatgtctatatatacttgctgtaacagat--acttcattaatgagaataatacttttccataca |
397 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| || |
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| T |
25633485 |
tatagtatatgatagcttaattaatgtacacaaacatatgtctatatatacttgctgtaacagatacacttcatcaatgagaataatacttctccattca |
25633386 |
T |
|
| Q |
398 |
tttttctggtttcctaatatt |
418 |
Q |
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||||||||||||||||||||| |
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| T |
25633385 |
tttttctggtttcctaatatt |
25633365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 28669586 - 28669485
Alignment:
| Q |
254 |
attacttgcagcctaagcaactagatctaagagtgcttagctacactatagcatatgatagcttaattaatgtacacaaacata-tgtctatatatactt |
352 |
Q |
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||||||||||| |||||||||||| || ||||| |||||||||||||| || ||||||||||||| ||| |||| ||| ||||||||||||||| |
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| T |
28669586 |
attacttgcagtctaagcaactag-tcgcagagtaattagctacactataacacatgatagcttaat----gtagacaagcattctgtctatatatactt |
28669492 |
T |
|
| Q |
353 |
gctgtaa |
359 |
Q |
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||||||| |
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| T |
28669491 |
gctgtaa |
28669485 |
T |
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