View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_high_9 (Length: 376)
Name: NF8319A_high_9
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 27487903 - 27488249
Alignment:
| Q |
8 |
taacagagaaaaagatgcagagtattatgagattagaaatgaaatggaaaataagattttcattgattgaataagcttgtacaactagtatttataagct |
107 |
Q |
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| T |
27487903 |
taacagagaaaaagatgcagagtattatgagattagaaatgaaatggaaaataagattttcattgattgaataagcttgtacaactagtatttataagct |
27488002 |
T |
|
| Q |
108 |
actagatccttatgcttattaacatgtacctaaagcataggataataactcgtgtaactaactgaaactaacttgagctagttacttgcagtgcaagtta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27488003 |
actagatccttatgcttattaacatgtacctaaagcatagaataataactcttgtaactaactgaaactaacttgagcaagttacttgcagtgcaagtta |
27488102 |
T |
|
| Q |
208 |
ttacaattagaggtttcaatctttctgttttcttcgtgatgcaatacagagttctttgcattctagtagatacatgtgccagaagaagagataaaagttc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
27488103 |
ttacaattagaggtttcaatctttctgttttcttcgtgatgcaatacagagttctttgcattctagtagatacatgtgctcgaagaagagataaaacttc |
27488202 |
T |
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| Q |
308 |
ttgaatcagagctggagggtaggatttaaggatgagcctatactctt |
354 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27488203 |
ttgaatcagagctggagggtaggatttaaggacgagcctatactctt |
27488249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 27480551 - 27480897
Alignment:
| Q |
8 |
taacagagaaaaagatgcagagtattatgagattagaaatgaaatggaaaataagattttcattgattgaataagcttgtacaactagtatttataagct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27480551 |
taacagagaaaaagatgcagagtattatgagattagaaatgaaatggaaaataagattttcattgattgaataagcttgtacaactagtatttataagct |
27480650 |
T |
|
| Q |
108 |
actagatccttatgcttattaacatgtacctaaagcataggataataactcgtgtaactaactgaaactaacttgagctagttacttgcagtgcaagtta |
207 |
Q |
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| T |
27480651 |
actagatccttatgcttattaacatgtacctaaagcatagaataataactctagtaactaacagaaactaacttgagcaagttacttgcagtgcaagtta |
27480750 |
T |
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| Q |
208 |
ttacaattagaggtttcaatctttctgttttcttcgtgatgcaatacagagttctttgcattctagtagatacatgtgccagaagaagagataaaagttc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
27480751 |
ttacaattagaggtttcaatctttctgttttcttcgtgatgcaatacagagttctttgcattctagtagatacatgtgctcgaagaagagataaaacttc |
27480850 |
T |
|
| Q |
308 |
ttgaatcagagctggagggtaggatttaaggatgagcctatactctt |
354 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27480851 |
ttgaatcagagctggagggtaggatttaaggacgagcctatactctt |
27480897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 25189630 - 25189681
Alignment:
| Q |
119 |
atgcttattaacatgtaccta-aagcataggataataactcgtgtaactaact |
170 |
Q |
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| T |
25189630 |
atgcttactaacatgtacctagaagcataggataataactc-tgtaactaact |
25189681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 129 - 253
Target Start/End: Original strand, 31691192 - 31691313
Alignment:
| Q |
129 |
acatgtacctaaagcataggataataactcgtgtaactaact-gaaactaacttgagctagttacttgcagtgcaagttattacaattagaggtttcaat |
227 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || |||||| ||||||||||| || |||||| |
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| T |
31691192 |
acatgtacctaaagcataggataataactcttgtaactaactaaaaactaacttgagctagttacgtgtagtgca----attacaattagtggattcaat |
31691287 |
T |
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| Q |
228 |
ctttctgttttcttcgtgatgcaata |
253 |
Q |
| |
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|||||| || |||||||||||||||| |
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| T |
31691288 |
ctttctattatcttcgtgatgcaata |
31691313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 254
Target Start/End: Original strand, 18314341 - 18314533
Alignment:
| Q |
62 |
gattttcattgattgaataagcttgtacaactagtatttataagctactagatccttatgcttattaacatgtaccta-aagcataggataataactcgt |
160 |
Q |
| |
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|||| ||||||||||||| ||||||||||||| |||||||| | | || | ||| ||||||| ||||||||||||| ||||||||||||||||||| | |
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| T |
18314341 |
gattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatgtacctagaagcataggataataactc-t |
18314439 |
T |
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| Q |
161 |
gtaactaactgaaactaacttgagctagttacttg-cagtgcaagttattacaattagaggtttcaatctttctg-ttttcttcgtgatgcaatac |
254 |
Q |
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|||||||||| |||||| | ||||||||||||| ||| |||| ||||||| || | ||| ||||||||| |||||||||||||||||||| |
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| T |
18314440 |
gtaactaact-aaactattctaagctagttacttgtcag-acaagctattacactttaggattttcatctttctgtttttcttcgtgatgcaatac |
18314533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 40280589 - 40280422
Alignment:
| Q |
30 |
tattatgagattagaaatgaaatggaaaataagattttcattgattgaataagcttgtacaactagtatttataagctactagatccttatgcttattaa |
129 |
Q |
| |
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||||||||| ||||||||| ||||||||||| |||| |||||||||||||||||||||| ||| |||||||||||| | || |||| ||||| | ||| |
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| T |
40280589 |
tattatgagtttagaaatggaatggaaaatatgattctcattgattgaataagcttgtataacaagtatttataagttgttatatccacatgctaactaa |
40280490 |
T |
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| Q |
130 |
catgtaccta-aagcataggataataactcgtgtaactaactgaaactaacttgagctagttacttgca |
197 |
Q |
| |
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|||| ||||| |||||||||| || |||| |||||||||| ||||||| | ||||||||||||||| |
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| T |
40280489 |
catgaacctagaagcataggaacattactc-agtaactaactaaaactaatctaagctagttacttgca |
40280422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 9843218 - 9843269
Alignment:
| Q |
119 |
atgcttattaacatgtaccta-aagcataggataataactcgtgtaactaact |
170 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
9843218 |
atgcttactaacatgtacctagaagcataggataataactc-tgtaactaact |
9843269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 9849344 - 9849395
Alignment:
| Q |
119 |
atgcttattaacatgtaccta-aagcataggataataactcgtgtaactaact |
170 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
9849344 |
atgcttactaacatgtacctagaagcataggataataactc-tgtaactaact |
9849395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 23871565 - 23871639
Alignment:
| Q |
28 |
agtattatgagattagaaatgaaatggaaaataagattttcattgattgaataagcttgtacaactagtatttat |
102 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
23871565 |
agtattatgagtttagaaatagaatggaaaatatgattctcattgattgaataagcttgtacaacaagtatttat |
23871639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 170
Target Start/End: Original strand, 8368280 - 8368420
Alignment:
| Q |
30 |
tattatgagattagaaatgaaatggaaaataagattttcattgattgaataagcttgtacaactagtatttataagctactagatccttatgcttattaa |
129 |
Q |
| |
|
|||||||||| |||||| ||| |||| || |||| ||||||||||||| |||||||||||| |||||||| | | || | ||| |||| || ||| |
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| T |
8368280 |
tattatgagaagtgaaatggaatagaaattatgattctcattgattgaattagcttgtacaaccgttatttataggttgttataacctcatgcctactaa |
8368379 |
T |
|
| Q |
130 |
catgtaccta-aagcataggataataactcgtgtaactaact |
170 |
Q |
| |
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|||||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
8368380 |
catgtacctagaagcataggataataactc-tgtaactaact |
8368420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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