View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8319A_low_102 (Length: 260)
Name: NF8319A_low_102
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8319A_low_102 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 45643012 - 45643255
Alignment:
| Q |
6 |
tggtgttgcagaaggagcagcagaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaacgtgtt |
105 |
Q |
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| T |
45643012 |
tggtgttgcagaaggagcagcagaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgtt |
45643111 |
T |
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| Q |
106 |
cccgcttctttgaggggaatggttgtggcaccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatcca |
205 |
Q |
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|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
45643112 |
cccgcttctttgaggggaatggttgtggcaccgctactgtctgtactaattgaatttccagttgtgcatgatttatagtcactttctttaacttcatcca |
45643211 |
T |
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| Q |
206 |
ctgtgtgccacccagcttcatagttgaaaactgtcaataataaagtta |
253 |
Q |
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| T |
45643212 |
ctgtgtg---cccagctacatagttgaacactgtc-ataataaagtta |
45643255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 45650283 - 45650508
Alignment:
| Q |
13 |
gcagaaggagcagcagaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaacgtgttcccgctt |
112 |
Q |
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||||||| |||| |||||||| |||||| |||||| | |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| |||| |
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| T |
45650283 |
gcagaagaagcactagaagaagccttaactttaacagaaagtttcatgccacctgtgcaatgtccaggaacagcacatatgaagtaatgtgttcctgctt |
45650382 |
T |
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| Q |
113 |
ctttgaggggaatggttgtggcaccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtg |
212 |
Q |
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| T |
45650383 |
tcttgaggggaatggttgtgggaccactgctgtcagtactaattgaatttccagttgtgcatgatttatagtcactttctttaacttcatccactgtgtg |
45650482 |
T |
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| Q |
213 |
ccacccagcttcatagttgaaaactgtca |
241 |
Q |
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| T |
45650483 |
---cccagctccatagttgaatactgtca |
45650508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 39 - 253
Target Start/End: Complemental strand, 45703282 - 45703063
Alignment:
| Q |
39 |
aaccttaacaaagagtttcatgccaaa---tgtgcaatgtccaggaatagcacatatgaagtaacgtgttcccgcttctttgaggggaatggttgtggca |
135 |
Q |
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| T |
45703282 |
aaccttaacagagagtttcatgccaccacttatgcaatgtacaggaacagcacatatgaagtaatgagttcctgcttttttgaggggaatggttgtggca |
45703183 |
T |
|
| Q |
136 |
ccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaaa |
235 |
Q |
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| T |
45703182 |
ccactaccgtctgtactaattgaatttctagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaca |
45703083 |
T |
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| Q |
236 |
ctgtc--aataataaagtta |
253 |
Q |
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||||| ||||||||||||| |
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| T |
45703082 |
ctgtcataataataaagtta |
45703063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 39 - 241
Target Start/End: Complemental strand, 45887094 - 45886889
Alignment:
| Q |
39 |
aaccttaacaaagagtttcatgccaaa---tgtgcaatgtccaggaatagcacatatgaagtaacgtgttcccgcttctttgaggggaatggttgtggca |
135 |
Q |
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|||||||||| |||||||||||||| | |||||||| |||||| |||||||||||||||| | ||||| |||| |||||||||||||||||||||| |
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| T |
45887094 |
aaccttaacagagagtttcatgccaccacttatgcaatgtacaggaacagcacatatgaagtaatgagttcctgcttttttgaggggaatggttgtggca |
45886995 |
T |
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| Q |
136 |
ccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaaa |
235 |
Q |
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| T |
45886994 |
ccactaccgtctgtactaattgaatttctagttgtgcatgaattatagtcactttcattaacttcatccactgtgtgccacccagcttcatagttgaaca |
45886895 |
T |
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| Q |
236 |
ctgtca |
241 |
Q |
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|||||| |
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| T |
45886894 |
ctgtca |
45886889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 30054756 - 30054843
Alignment:
| Q |
127 |
gttgtggcaccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgcc |
214 |
Q |
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| T |
30054756 |
gttgtggcaccgctactgtctgtactaattgaatttctggttatgcatgatttatagtcactttctttaacttaatccactgtgtgcc |
30054843 |
T |
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