View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8319A_low_114 (Length: 251)

Name: NF8319A_low_114
Description: NF8319A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8319A_low_114
NF8319A_low_114
[»] chr1 (4 HSPs)
chr1 (1-245)||(48066587-48066831)
chr1 (12-245)||(48099543-48099776)
chr1 (3-245)||(48062500-48062742)
chr1 (10-243)||(48106142-48106375)
[»] scaffold1463 (1 HSPs)
scaffold1463 (1-157)||(849-1005)
[»] chr4 (1 HSPs)
chr4 (1-163)||(50231227-50231389)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 48066587 - 48066831
Alignment:
Q  1 aatatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48066587 aatatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaattaattgtccactatatct 48066686  T
Q  101 tgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaa 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48066687 tgaaaccacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgtcccacaaa 48066786  T
Q  201 atggcatgacctctgacagaaatgccattttctttggcaaatttc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  48066787 atggcatgacctctgacagaaatgccattttctttggcaaatttc 48066831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 48099543 - 48099776
Alignment:
Q  12 gaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacag 111  Q
    |||||||||||||||||||||| |||||||||| |||  ||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||| ||||    
T  48099543 gaggcattttcgccgagtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctataccttgaaaccacag 48099642  T
Q  112 atttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacc 211  Q
    || | ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||  ||||||||  ||||||||| ||| |||| || ||||||    
T  48099643 atcttattctttttgcagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctgaaaagtttcatcgtcccagaaaacggtatgacc 48099742  T
Q  212 tctgacagaaatgccattttctttggcaaatttc 245  Q
    ||||||||||||||||||||||||||| ||||||    
T  48099743 tctgacagaaatgccattttctttggcgaatttc 48099776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 48062500 - 48062742
Alignment:
Q  3 tatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttg 102  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||   ||||||||||| || || |||||||||||||||||||||||  |||| ||||    
T  48062500 tatactgcagaggcatttttgccgaggttgtcctcaaaaaagtggaagtggacattctcatttaccacgtcccatgcaatcaattgtcctttataccttg 48062599  T
Q  103 aaacaacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaat 202  Q
    | || || |||||||||||||||||||| |||||||||||||| |||||||| ||||||    ||||||  || |||  |||||||  || |||||||||    
T  48062600 agaccacggatttcattctttttgcagctgcttctcgtaattcatcaggagacagggacaaatcccattcaggttgacgtctttcactgtcccacaaaat 48062699  T
Q  203 ggcatgacctctgacagaaatgccattttctttggcaaatttc 245  Q
    |  ||||||||||||||| ||||||||||| || |||||||||    
T  48062700 gttatgacctctgacagatatgccattttccttagcaaatttc 48062742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 48106142 - 48106375
Alignment:
Q  10 cagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaac 109  Q
    |||| |||||||| || |||||||||||| ||||| |   ||||||||| || ||||| || |||||||||||||||| |||  |||| |||  ||||||    
T  48106142 cagatgcattttcacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaac 48106241  T
Q  110 agatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatga 209  Q
    |||||  |||||||||   || ||||  || ||||| || || ||||   |||| |||||||  || ||| || ||||||||| ||| ||||||  ||||    
T  48106242 agattcgattctttttttcgcggctttgcgcaattcatcgggcgataaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatga 48106341  T
Q  210 cctctgacagaaatgccattttctttggcaaatt 243  Q
    |||||||||||||| ||||| ||||| |||||||    
T  48106342 cctctgacagaaattccattatctttagcaaatt 48106375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1463 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold1463
Description:

Target: scaffold1463; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 1005 - 849
Alignment:
Q  1 aatatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatct 100  Q
    |||||||||||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1005 aatatactgcagaggcattttctccgagtttgtcctaaaaaaatcggttgtggacattctcgttcacaacgtcccatgcaatcaattgtccactatatct 906  T
Q  101 tgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcaggagatag 157  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  905 tgaaaccacagatttcattctttttgcagccgcttctcgtaattcttcaggagatag 849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 50231227 - 50231389
Alignment:
Q  1 aatatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatct 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  50231227 aatatactgcagaggcatttttgccgagtttgtcctcaaaaaaccggttgtggacattctcgtttacaacgtcccatgcaatcaattgtccactatatct 50231326  T
Q  101 tgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggactt 163  Q
    |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50231327 tgaaaccaaaaatttcattctttttgcagccgcttctcgtaattcttcaggagatagggactt 50231389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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